https://w3id.org/np/RAmMvOSm53JgG-wDnV3hJKSkpxrdOQdKc1G-7ka4gTQco
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dc:description "The deposit holds per-specimen inter-landmark distances, not coordinates, so the pre-registered secondary plan was run. Each specimen's 39 log distances were centred on their mean (log geometric-mean size correction); species means were taken; the log ratio Pan troglodytes / Homo was formed for each distance. Each of the 21 landmarks was assigned to an ordered region of the human skull from its anatomical name (1 neurocranium/vault/cranial base: BR LD AS OPI BA JP APET EAM SP TS KR; 2 orbit/upper face/nasal/zygomatic arch: NA FM ZS ZYGO NSL; 3 maxilla/palate/alveolar: IS PM PNS MT ZI), and each distance scored by the mean of its endpoint ranks. Spearman rho between score and log ratio, medians by region and a bootstrap over specimens (2000 resamples) were computed; Gorilla and Pan paniscus were run as replications that do not enter the verdict.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: 0.6962 Spearman rho (region score vs size-corrected log distance ratio Pan troglodytes/Homo) (n = 39, bootstrap 95% CI over specimens 0.664-0.732; p = 8.6e-7). Interpretation: Thompson's grids compare lateral profile drawings of one human, one chimpanzee and one baboon skull. His claim has two parts: (1) the human-to-ape change is a single smooth deformation, not independent changes of jaws, braincase and face; (2) within that deformation the local area ratio increases 'in a gradual and approximately logarithmic order' downwards and forwards, i.e. the logarithm of the area ratio grows roughly linearly with position along the down-forward direction. Both are operationalized on species mean landmark configurations via a thin-plate spline (the modern formalisation of Thompson's coordinate transformation): smoothness and single-gradient structure are measured by how much of the variation in log local area ratio is explained by a linear gradient in down-forward position, and the 'logarithmic order' by the sign and strength of that gradient. Searches of Dryad, Zenodo and figshare on 2026-10-31 found no public per-specimen landmark set containing Papio together with Homo and Pan; MorphoSource and Phenome10K scans require a login and would also require digitising landmarks, which is beyond this test. The Zenodo deposit of Schroeder & von Cramon-Taubadel (2017, Evolution) covers 15 extant hominoid taxa including Homo and Pan; its exact contents (coordinates vs distances, per specimen vs summary) were not inspected before this pre-registration, which is why primary and secondary plans are both stated.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of thompson1917-ch17-16: supports, confidence 0.5";
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<https://w3id.org/delphi/ontology/admissibleDatasets> "Planned datasets: zenodo-4976293-schroeder-voncramontaubadel-2017-hominoid-crania";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
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<https://w3id.org/delphi/ontology/disconfirmingObservation> "Pre-registered. Refuted if Spearman rho(u, log J) < 0.3 (primary plan) or rho(region rank, log ratio) < 0.3 (secondary plan), or if the correlation of log J with x_forward and with y_downward have opposite signs (expansion forwards but contraction downwards or vice versa), or if the regression of log J on u explains < 25% of the variance while log J differs between anatomical regions in a non-monotone way (patchwork rather than gradient). Results between the pass and fail thresholds are 'mixed'. If the deposited file contains neither coordinates nor named inter-landmark distances per specimen (e.g. only summary statistics), the verdict is inconclusive with reason data-unavailable.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "No baboon (Papio) data were available; Thompson's statement that the baboon shows 'the same order' of deformation with greater intensity is untested. Gorilla, which Thompson also mentions, shows the same gradient with a steeper slope (0.28 vs 0.22 log units per region step), consistent with his 'increased intensity' remark.",
"Secondary (weaker) plan: the deposit gives inter-landmark distances, not landmark coordinates, so no thin-plate-spline area ratios could be computed; distance ratios are linear rather than areal scale factors and position is an ordinal three-level region score assigned by the analyst from landmark names, not a measured coordinate.",
"Spearman p-values treat the 39 distances as independent, which they are not (shared endpoints); the bootstrap CI over specimens does not address this dependence either.",
"Species means of adult crania of mixed sex were compared; the dataset's log distances are size-corrected by geometric mean, so the test concerns shape, whereas Thompson's figures also carried a size difference.",
"The relation is monotone and roughly linear in log ratio across region ranks (R^2 0.48 for Pan, 0.51 for Gorilla), which is what 'approximately logarithmic order' predicts, but with only three ordinal positions a linear trend cannot be distinguished from other monotone shapes.",
"Within the neurocranium, cranial-base distances (APET-BA, KR-SP, BA-EAM) have positive log ratios while vault distances (BR-LD, LD-AS, OPI-LD) are strongly negative, in line with Thompson's claim that the gradient runs downwards as well as forwards; this was not a pre-registered test.";
<https://w3id.org/delphi/ontology/expectedObservation> "Pre-registered. Primary plan (landmark coordinates available for Homo sapiens and Pan troglodytes): generalised Procrustes superimposition of all specimens; species mean configurations; projection of the means onto the midsagittal plane (midline landmarks as they are, bilateral landmarks averaged across sides) giving a lateral profile with x = antero-posterior and y = supero-inferior axes defined by the Frankfurt-like orientation of the human mean; fit a 2-D thin-plate spline mapping the human mean to the chimpanzee mean and evaluate its Jacobian determinant J (local area ratio chimpanzee/human) at every landmark of the human mean. Define the down-forward coordinate u = (x_forward + y_downward)/sqrt(2) of each landmark. The claim is supported if (a) Spearman rho(u, log J) >= 0.6 with positive sign, (b) the sign of the correlation of log J with x_forward alone and with y_downward alone is positive in both, and (c) an ordinary linear regression of log J on u explains >= 50% of the variance in log J (the 'logarithmic order' of areas, i.e. geometric progression of area ratio with grid position). Secondary plan (only inter-landmark distances available): log of the ratio of chimpanzee to human mean distance, each distance first divided by the geometric mean of all distances in its specimen; assign each distance by the anatomical names of its endpoints to one of three ordered regions (1 neurocranium/vault/occiput, 2 orbit/upper face/nasal, 3 maxilla/palate/mandible/alveolar); supported if Spearman rho(region rank, log ratio) >= 0.6 and region medians increase monotonically 1 < 2 < 3. If the data also contain Gorilla, the same statistics are reported for Gorilla as a replication but do not enter the verdict. Because baboon (Papio) data could not be located, confidence attached to any verdict is capped at 0.6.";
<https://w3id.org/delphi/ontology/failCriterion> "Pre-registered. Refuted if Spearman rho(u, log J) < 0.3 (primary plan) or rho(region rank, log ratio) < 0.3 (secondary plan), or if the correlation of log J with x_forward and with y_downward have opposite signs (expansion forwards but contraction downwards or vice versa), or if the regression of log J on u explains < 25% of the variance while log J differs between anatomical regions in a non-monotone way (patchwork rather than gradient). Results between the pass and fail thresholds are 'mixed'. If the deposited file contains neither coordinates nor named inter-landmark distances per specimen (e.g. only summary statistics), the verdict is inconclusive with reason data-unavailable.";
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<https://w3id.org/delphi/ontology/hasVerdict> "supports";
<https://w3id.org/delphi/ontology/hypothesis> "If the differences between the human skull and the chimpanzee (and baboon) skull form one continuous deformation whose grid areas 'increase in a gradual and approximately logarithmic order' from above downwards and from behind forwards, then the local area scale factor of the human-to-ape transformation of the lateral (sagittal) skull profile must be a smooth monotone function of antero-inferior position, with its logarithm roughly linear in that position, rather than a patchwork of region-specific changes.";
<https://w3id.org/delphi/ontology/inferenceMethod> "The deposit holds per-specimen inter-landmark distances, not coordinates, so the pre-registered secondary plan was run. Each specimen's 39 log distances were centred on their mean (log geometric-mean size correction); species means were taken; the log ratio Pan troglodytes / Homo was formed for each distance. Each of the 21 landmarks was assigned to an ordered region of the human skull from its anatomical name (1 neurocranium/vault/cranial base: BR LD AS OPI BA JP APET EAM SP TS KR; 2 orbit/upper face/nasal/zygomatic arch: NA FM ZS ZYGO NSL; 3 maxilla/palate/alveolar: IS PM PNS MT ZI), and each distance scored by the mean of its endpoint ranks. Spearman rho between score and log ratio, medians by region and a bootstrap over specimens (2000 resamples) were computed; Gorilla and Pan paniscus were run as replications that do not enter the verdict.";
<https://w3id.org/delphi/ontology/passCriterion> "Pre-registered. Primary plan (landmark coordinates available for Homo sapiens and Pan troglodytes): generalised Procrustes superimposition of all specimens; species mean configurations; projection of the means onto the midsagittal plane (midline landmarks as they are, bilateral landmarks averaged across sides) giving a lateral profile with x = antero-posterior and y = supero-inferior axes defined by the Frankfurt-like orientation of the human mean; fit a 2-D thin-plate spline mapping the human mean to the chimpanzee mean and evaluate its Jacobian determinant J (local area ratio chimpanzee/human) at every landmark of the human mean. Define the down-forward coordinate u = (x_forward + y_downward)/sqrt(2) of each landmark. The claim is supported if (a) Spearman rho(u, log J) >= 0.6 with positive sign, (b) the sign of the correlation of log J with x_forward alone and with y_downward alone is positive in both, and (c) an ordinary linear regression of log J on u explains >= 50% of the variance in log J (the 'logarithmic order' of areas, i.e. geometric progression of area ratio with grid position). Secondary plan (only inter-landmark distances available): log of the ratio of chimpanzee to human mean distance, each distance first divided by the geometric mean of all distances in its specimen; assign each distance by the anatomical names of its endpoints to one of three ordered regions (1 neurocranium/vault/occiput, 2 orbit/upper face/nasal, 3 maxilla/palate/mandible/alveolar); supported if Spearman rho(region rank, log ratio) >= 0.6 and region medians increase monotonically 1 < 2 < 3. If the data also contain Gorilla, the same statistics are reported for Gorilla as a replication but do not enter the verdict. Because baboon (Papio) data could not be located, confidence attached to any verdict is capped at 0.6.";
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dc:description "39 natural-log inter-landmark cranial distances for 547 adult hominoid crania: Homo sapiens n=50, Pan troglodytes n=96 (three subspecies), Pan paniscus n=40, Gorilla n=110, Pongo n=66, Hylobatidae n=184";
dc:license "CC0 1.0";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Data from: The evolution of hominoid cranial diversity: a quantitative genetic approach (Schroeder & von Cramon-Taubadel 2017, Evolution)";
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