https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo> .
@prefix sub: <https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "Searched Europe PMC with 'zebrafish embryonic stages optic vesicle' and OPEN_ACCESS:Y, pageSize 25 (1374 hits). Opened 24 full texts; one hit had no PMCID. No JATS table-wrap caption or header contains stage together with eye, optic or somite. The position of the embryo in the egg and the contrast with insect grubs are untested.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: null 1 if the earliest organ named in a staging table is the eye and no other organ (n = 0, no admissible staging table in the 25-hit window). Interpretation: Aristotle's 'upper end of the egg' is the animal pole of a telolecithal egg, where the blastodisc sits, and the membrane is the envelope around that embryo. 'First organs visible' ignores somites and the notochord, which are not the organs he contrasts with the eyes. One model species, if it is the only tabulated oviparous fish, is a real measurement with a denominator of 1, not a universal census. The contrast with insect grubs is a different clause and stays untested when no insect table is fetched.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha06-24: inconclusive, confidence 0.8";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha06-24/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "A checksummed open-access staging table that orders stages and names visible structures for an oviparous fish. Prose reviews that are not tables, and insect staging series, do not decide the fish clause.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "none";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "A non-eye organ is named at an earlier stage than the eye, or the embryo is described at the vegetal pole.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "No species was scored. A single species would have been reported with denominator 1.",
"Only JATS table-wrap elements were read. Figures and untabulated prose do not count.",
"The pre-registered window is 25 hits. A staging table outside that window was not opened.";
<https://w3id.org/delphi/ontology/expectedObservation> "In the staging table, the earliest stage that names an organ names the eye or optic vesicle and no other organ, and the embryo is described at the animal or upper pole inside a membrane when that description is in the table.";
<https://w3id.org/delphi/ontology/failCriterion> "Refutes if any scored oviparous fish species has a non-eye organ named at an earlier stage than the eye or optic vesicle, or the table says the embryo forms at the vegetal pole. Inconclusive, reason data-unavailable, if no staging table is fetched. Inconclusive, reason not-operationalizable, if a table is fetched but stages cannot be ordered or organs cannot be read from cells. A single species can support the pattern and is reported with denominator n_species; it does not by itself establish the pattern for all oviparous fishes, which is stated as a caveat rather than a separate verdict.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.8"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1>,
<https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "If the claim holds, in oviparous fish embryos the first organ visible from the outside is the large eye, and the embryo forms at the upper end of the egg inside a membrane.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Order stages as the table orders them. Compare the first stage that mentions any pre-registered organ with whether that stage mentions the eye. Support if the eye is in that set and no other organ is. Refute if another organ appears earlier. Failure to parse the table is inconclusive, not a verdict on the embryos.";
<https://w3id.org/delphi/ontology/passCriterion> "Admissible dataset: the first Europe PMC open-access table from the query 'zebrafish embryonic stages optic vesicle', pageSize 25, whose header or caption contains stage and (eye or optic or somite). Organs, pre-registered, are eye or optic vesicle or optic cup, otic vesicle or ear, heart, gut, liver, fin and mouth. Somites, notochord, blastoderm, germ ring and Kupffer's vesicle are not organs. For a species, the eye clause holds if the earliest stage at which any organ is named has the eye or optic vesicle among the named structures and no other organ. The position clause holds if the same source's table or its caption says the embryo forms at the animal pole, blastodisc or upper pole and inside a membrane, chorion or enveloping layer. Supports if at least one oviparous fish species meets the eye clause. If the position clause is not in the table, it is untested and does not block support of the eye clause. If the table covers several species, every species must meet the eye clause. The grub contrast (posterior end first) is untested unless an insect staging table is in the same fetched file.";
<https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
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<https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test> .
<https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "first 25 open-access hits";
dc:license "not stated in the Europe PMC search record";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Europe PMC search: zebrafish embryonic stages optic vesicle";
prov:atLocation <https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=zebrafish+embryonic+stages+optic+vesicle+OPEN_ACCESS%3AY&format=json&pageSize=25&resultType=core>;
prov:wasDerivedFrom <https://europepmc.org/>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:8de1f3dc84ba698e6d1c4837fcd416c861bca449bbe0cc8ccfbe40bbf8478d15" .
<https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "table captions and headers scanned for stage and eye, optic or somite";
dc:license "article licences are on the individual search hits; the search record does not state one licence for the set";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Full texts opened for the zebrafish staging search";
prov:atLocation <https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12597868/fullTextXML>,
<https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12648955/fullTextXML>, <https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12701590/fullTextXML>,
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<https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13643694/fullTextXML>, <https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13664112/fullTextXML>,
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<https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13678881/fullTextXML>;
prov:wasDerivedFrom <https://europepmc.org/>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:086dcb82727068522a707076117ec32f06906ff9b0bbb457269a748c7c6b64f3",
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}
sub:provenance {
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<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (Grok 4.7; cursor/aristotle-breeding-f-77ba)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
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<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "Grok 4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha06-24/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
prov:qualifiedAssociation sub:plan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
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sub:pubinfo {
this: dc:created "2026-11-08T16:24:31.772Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha06-24: inconclusive, confidence 0.8";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
sub:sig npx:hasAlgorithm "RSA";
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