https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo/Head https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo/assertion https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo/provenance https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo/pubinfo https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RA_rvgJb5GEtAgOsP3jQfE5kHJd4O6O2tcEZFPfLYsqeo/assertion https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test http://purl.org/dc/terms/description Searched Europe PMC with 'zebrafish embryonic stages optic vesicle' and OPEN_ACCESS:Y, pageSize 25 (1374 hits). Opened 24 full texts; one hit had no PMCID. No JATS table-wrap caption or header contains stage together with eye, optic or somite. The position of the embryo in the egg and the contrast with insect grubs are untested. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/Assessment https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test http://www.w3.org/2000/01/rdf-schema#comment Measured: null 1 if the earliest organ named in a staging table is the eye and no other organ (n = 0, no admissible staging table in the 25-hit window). Interpretation: Aristotle's 'upper end of the egg' is the animal pole of a telolecithal egg, where the blastodisc sits, and the membrane is the envelope around that embryo. 'First organs visible' ignores somites and the notochord, which are not the organs he contrasts with the eyes. One model species, if it is the only tabulated oviparous fish, is a real measurement with a denominator of 1, not a universal census. The contrast with insect grubs is a different clause and stays untested when no insect table is fetched. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test http://www.w3.org/2000/01/rdf-schema#label Claim test of aristotle-ha06-24: inconclusive, confidence 0.8 https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test http://www.w3.org/2000/01/rdf-schema#seeAlso https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha06-24/result.json https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7 https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/admissibleDatasets A checksummed open-access staging table that orders stages and names visible structures for an oviparous fish. Prose reviews that are not tables, and insect staging series, do not decide the fish clause. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/assessmentType claim-test/0.1.0 https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/dataKind none https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/disconfirmingObservation A non-eye organ is named at an earlier stage than the eye, or the embryo is described at the vegetal pole. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/evidenceAgainst No species was scored. A single species would have been reported with denominator 1. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/evidenceAgainst Only JATS table-wrap elements were read. Figures and untabulated prose do not count. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The pre-registered window is 25 hits. A staging table outside that window was not opened. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/expectedObservation In the staging table, the earliest stage that names an organ names the eye or optic vesicle and no other organ, and the embryo is described at the animal or upper pole inside a membrane when that description is in the table. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/failCriterion Refutes if any scored oviparous fish species has a non-eye organ named at an earlier stage than the eye or optic vesicle, or the table says the embryo forms at the vegetal pole. Inconclusive, reason data-unavailable, if no staging table is fetched. Inconclusive, reason not-operationalizable, if a table is fetched but stages cannot be ordered or organs cannot be read from cells. A single species can support the pattern and is reported with denominator n_species; it does not by itself establish the pattern for all oviparous fishes, which is stated as a caveat rather than a separate verdict. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/hasConfidence 0.8 https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1 https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2 https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/hasVerdict inconclusive https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/hypothesis If the claim holds, in oviparous fish embryos the first organ visible from the outside is the large eye, and the embryo forms at the upper end of the egg inside a membrane. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/inferenceMethod Order stages as the table orders them. Compare the first stage that mentions any pre-registered organ with whether that stage mentions the eye. Support if the eye is in that set and no other organ is. Refute if another organ appears earlier. Failure to parse the table is inconclusive, not a verdict on the embryos. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/passCriterion Admissible dataset: the first Europe PMC open-access table from the query 'zebrafish embryonic stages optic vesicle', pageSize 25, whose header or caption contains stage and (eye or optic or somite). Organs, pre-registered, are eye or optic vesicle or optic cup, otic vesicle or ear, heart, gut, liver, fin and mouth. Somites, notochord, blastoderm, germ ring and Kupffer's vesicle are not organs. For a species, the eye clause holds if the earliest stage at which any organ is named has the eye or optic vesicle among the named structures and no other organ. The position clause holds if the same source's table or its caption says the embryo forms at the animal pole, blastodisc or upper pole and inside a membrane, chorion or enveloping layer. Supports if at least one oviparous fish species meets the eye clause. If the position clause is not in the table, it is untested and does not block support of the eye clause. If the table covers several species, every species must meet the eye clause. The grub contrast (posterior end first) is untested unless an insect staging table is in the same fetched file. https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/ontology/preregistered false https://w3id.org/delphi/resource/claim/aristotle-ha06-24 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/aristotle-ha06-24--claim-test https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1 http://purl.org/dc/terms/description first 25 open-access hits https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1 http://purl.org/dc/terms/license not stated in the Europe PMC search record https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1 http://www.w3.org/2000/01/rdf-schema#label Dataset: Europe PMC search: zebrafish embryonic stages optic vesicle https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=zebrafish+embryonic+stages+optic+vesicle+OPEN_ACCESS%3AY&format=json&pageSize=25&resultType=core https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1 http://www.w3.org/ns/prov#wasDerivedFrom https://europepmc.org/ https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:8de1f3dc84ba698e6d1c4837fcd416c861bca449bbe0cc8ccfbe40bbf8478d15 https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2 http://purl.org/dc/terms/description table captions and headers scanned for stage and eye, optic or somite https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2 http://purl.org/dc/terms/license article licences are on the individual search hits; the search record does not state one licence for the set https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2 http://www.w3.org/2000/01/rdf-schema#label Dataset: Full texts opened for the zebrafish staging search https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2 http://www.w3.org/ns/prov#atLocation https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12597868/fullTextXML https://w3id.org/delphi/resource/evidence/aristotle-ha06-24--claim-test--dataset-2 http://www.w3.org/ns/prov#atLocation https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12648955/fullTextXML 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