https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ> .
@prefix sub: <https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "analysis.py downloaded the seven source files at commit bced77dd90e6a5c67bf7a557610b19ee995db729 and the figshare docx, recorded byte size and SHA-256, and searched the docx for a numeric table or a numeric file. The archive contains four images and a caption document with zero Word tables. It then attempted to import MultiNEAT, which raised ModuleNotFoundError. No cell-state trajectory was scored. The model was not re-integrated, and the paper's reported percentages were not copied into measured.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: null percent of cells matching the French flag at step 1000 (n = 0, not measured). Interpretation: Simulation-result claim. The paper concludes: \"Thus, we conclude that long-term stable survival does not need to be specifically selected for, as intrinsic dynamics and emergent anatomical regenerative capacity are enough to maintain order through an adult phase.\" The claim tested is the 1000-step maintenance, not the planarian experiment in the same article. A passing run shows that this program keeps the pattern. It does not show that tissues do this.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of levin-2023-goals-05: inconclusive, confidence 0.9";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/levin-papers/levin-2023-goals-05/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "A numeric cell-state trajectory of at least 1000 steps from the authors' model, from their code or a deposited table. A figure image and the paper's prose are not admissible.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "none";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "The tissue is dead by step 1000, or fewer than half the cells match the flag.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "Scoring the model requires MultiNEAT, Mesa and OpenCV, which are outside the standard tooling for these tests. Importing MultiNEAT failed.",
"The committed run.py sets nb_gens = 2. The paper states 250 generations and a population of 350. That evolution was not run.",
"The figshare supplement is three figure images (energy initialization, perturbation size, random initialization) and their captions.",
"The source files were fetched. They do not contain an evolved genome or a cell-state matrix, so the pre-registered accuracy was not computed.",
"This record does not show whether the program forms a French flag, and it does not show that cells do this.";
<https://w3id.org/delphi/ontology/expectedObservation> "At step 1000 the tissue is alive, at least 90 percent of cells match the French flag, and accuracy is at least as high as at step 100.";
<https://w3id.org/delphi/ontology/failCriterion> "Pre-registered: refutes if the tissue is dead before step 1000 or accuracy at step 1000 is < 50. Mixed if it is alive at step 1000 but accuracy is < 90 or lower than accuracy at step 100. If the authors' code cannot be executed and no numeric cell-state series extending to step 1000 can be fetched, the verdict is inconclusive with reason data-unavailable. The paper's 96.3 percent is not copied into measured.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.9"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1>,
<https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-2>,
<https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-3>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "A tissue evolved only over 100 developmental steps is still showing the French-flag pattern at step 1000.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Compare accuracy at steps 100 and 1000 with the thresholds 90 and 50, and record whether the tissue is alive at step 1000.";
<https://w3id.org/delphi/ontology/passCriterion> "Pre-registered before opening the supplementary file and before any developmental run. Supports if the tissue is alive at step 1000, French-flag accuracy at step 1000 is >= 90, and accuracy at step 1000 is >= accuracy at step 100. Accuracy is 100 times the fraction of cells in the target state. Evolution, if re-run, must score fitness only over the first 100 steps.";
<https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
<https://w3id.org/delphi/resource/claim/levin-2023-goals-05> <https://w3id.org/delphi/ontology/hasAssessment>
<https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test> .
<https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "authors' released model; nb_gens in run.py is 2 and no evolved genome is included. Not executed. The paper states 250 generations and population 350.";
dc:license "";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Pio-Lopez and Levin neural cellular automaton source, ES-HyperNEAT French-flag experiment";
prov:atLocation <https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/analysis.py>,
<https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/agents.py>,
<https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/model_for_analysis.py>,
<https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/schedule.py>,
<https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/server.py>,
<https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/visualize.py>,
<https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/run.py>;
prov:wasDerivedFrom <https://github.com/LPioL/scalefreecognition>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:0340609bbda69b0a77fb171332d18a24664ca72281437e213850d08d581cc42f",
"sha256:80007d10f78613bff14db5eac62443c59369d714f25385ba964bcd5c80662546", "sha256:bf05e91b35b0400842855cebf108d4036d15236554aa8362eaac25d09bbaa751",
"sha256:ca94cb5e472c94a7b77f10c6e152c5c04d75498b3da29caab15c3c299ebc87bc", "sha256:e9b4b6fc59a884b119a686e521f2f8a31e6e76fa735130ecca4d1022f5e16a3b",
"sha256:ebd87f69e0cda6a4939fc1c5e876e5d48cb505f52b213262e1314ba45c535a85", "sha256:f2889d99911b3e424b794e8bc4369a665b68504f2e7b6264baef9f1b12fc0de1" .
<https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-2>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "checked for a deposited cell-state or stress matrix; none present";
dc:license "";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Electronic supplementary material for Interface Focus 2023 rsfs.2022.0072";
prov:atLocation <https://ndownloader.figshare.com/files/39538311>;
prov:wasDerivedFrom <https://doi.org/10.6084/m9.figshare.c.6463335>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:e3b27beb1fbf133c719d36174dd56a663214e93c184b6cee2f601a272ba0c6be" .
<https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-3>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "claim text and the stated experimental parameters; not used as the measurement";
dc:license "CC BY";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Pio-Lopez L, Bischof J, LaPalme JV, Levin M (2023) The scaling of goals from cellular to anatomical homeostasis";
prov:wasDerivedFrom <https://doi.org/10.1098/rsfs.2022.0072> .
}
sub:provenance {
<https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (grok-4.7; cursor/levin-competency-goals-363e)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "grok-4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/levin-papers/levin-2023-goals-05/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
prov:qualifiedAssociation sub:plan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}
sub:pubinfo {
this: dc:created "2026-11-08T16:24:31.882Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of levin-2023-goals-05: inconclusive, confidence 0.9";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/levin-papers> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
npx:hasSignature "CQG7G8V+SY5PJpr/GU8bKSy1xmejitwxTfC/lhxpK4omlhEnPksftGi7liEbqpddKKYMOElmZwqoNZb9s9z85Pzp4GU3x5lizl9RWj9GYk9FVGp8HWl4NMT/cLYY888ktnb5LZ41m7bqjOazkmAgkrtYa1rourbcX5ABlsHNUXt62NprZK9mQPB9qKad8J3coPf/K0vWagqEw1bLUNTP0OpRvnT8VwooB7DEEt3iftyNG357MdeJvtcd2ZuZMdTjnRH/R7HPrPRP0bCY3wkec0eIoKxTvnea4JpIYwfOmlFd53tF+gVqZYMRrzGpK5KO+eD4lYW4V4At4WPmiJ7euQ==";
npx:hasSignatureTarget this:;
npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}