https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ/Head https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ/assertion https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ/provenance https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ/pubinfo https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RASHPSH2aqsHSSIsQ3njJSqC1P3Bj47w8IzextT9ChEjQ/assertion https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test http://purl.org/dc/terms/description analysis.py downloaded the seven source files at commit bced77dd90e6a5c67bf7a557610b19ee995db729 and the figshare docx, recorded byte size and SHA-256, and searched the docx for a numeric table or a numeric file. The archive contains four images and a caption document with zero Word tables. It then attempted to import MultiNEAT, which raised ModuleNotFoundError. No cell-state trajectory was scored. The model was not re-integrated, and the paper's reported percentages were not copied into measured. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/Assessment https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test http://www.w3.org/2000/01/rdf-schema#comment Measured: null percent of cells matching the French flag at step 1000 (n = 0, not measured). Interpretation: Simulation-result claim. The paper concludes: "Thus, we conclude that long-term stable survival does not need to be specifically selected for, as intrinsic dynamics and emergent anatomical regenerative capacity are enough to maintain order through an adult phase." The claim tested is the 1000-step maintenance, not the planarian experiment in the same article. A passing run shows that this program keeps the pattern. It does not show that tissues do this. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test http://www.w3.org/2000/01/rdf-schema#label Claim test of levin-2023-goals-05: inconclusive, confidence 0.9 https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test http://www.w3.org/2000/01/rdf-schema#seeAlso https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/levin-papers/levin-2023-goals-05/result.json https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7 https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/admissibleDatasets A numeric cell-state trajectory of at least 1000 steps from the authors' model, from their code or a deposited table. A figure image and the paper's prose are not admissible. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/assessmentType claim-test/0.1.0 https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/dataKind none https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/disconfirmingObservation The tissue is dead by step 1000, or fewer than half the cells match the flag. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/evidenceAgainst Scoring the model requires MultiNEAT, Mesa and OpenCV, which are outside the standard tooling for these tests. Importing MultiNEAT failed. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The committed run.py sets nb_gens = 2. The paper states 250 generations and a population of 350. That evolution was not run. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The figshare supplement is three figure images (energy initialization, perturbation size, random initialization) and their captions. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The source files were fetched. They do not contain an evolved genome or a cell-state matrix, so the pre-registered accuracy was not computed. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/evidenceAgainst This record does not show whether the program forms a French flag, and it does not show that cells do this. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/expectedObservation At step 1000 the tissue is alive, at least 90 percent of cells match the French flag, and accuracy is at least as high as at step 100. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/failCriterion Pre-registered: refutes if the tissue is dead before step 1000 or accuracy at step 1000 is < 50. Mixed if it is alive at step 1000 but accuracy is < 90 or lower than accuracy at step 100. If the authors' code cannot be executed and no numeric cell-state series extending to step 1000 can be fetched, the verdict is inconclusive with reason data-unavailable. The paper's 96.3 percent is not copied into measured. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/hasConfidence 0.9 https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-2 https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-3 https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/hasVerdict inconclusive https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/hypothesis A tissue evolved only over 100 developmental steps is still showing the French-flag pattern at step 1000. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/inferenceMethod Compare accuracy at steps 100 and 1000 with the thresholds 90 and 50, and record whether the tissue is alive at step 1000. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/passCriterion Pre-registered before opening the supplementary file and before any developmental run. Supports if the tissue is alive at step 1000, French-flag accuracy at step 1000 is >= 90, and accuracy at step 1000 is >= accuracy at step 100. Accuracy is 100 times the fraction of cells in the target state. Evolution, if re-run, must score fitness only over the first 100 steps. https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/ontology/preregistered false https://w3id.org/delphi/resource/claim/levin-2023-goals-05 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/levin-2023-goals-05--claim-test https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://purl.org/dc/terms/description authors' released model; nb_gens in run.py is 2 and no evolved genome is included. Not executed. The paper states 250 generations and population 350. https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://purl.org/dc/terms/license https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/2000/01/rdf-schema#label Dataset: Pio-Lopez and Levin neural cellular automaton source, ES-HyperNEAT French-flag experiment https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/analysis.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/agents.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/model_for_analysis.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/schedule.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/server.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/visualize.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/run.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 http://www.w3.org/ns/prov#wasDerivedFrom https://github.com/LPioL/scalefreecognition https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:0340609bbda69b0a77fb171332d18a24664ca72281437e213850d08d581cc42f https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:80007d10f78613bff14db5eac62443c59369d714f25385ba964bcd5c80662546 https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:bf05e91b35b0400842855cebf108d4036d15236554aa8362eaac25d09bbaa751 https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:ca94cb5e472c94a7b77f10c6e152c5c04d75498b3da29caab15c3c299ebc87bc https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:e9b4b6fc59a884b119a686e521f2f8a31e6e76fa735130ecca4d1022f5e16a3b https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:ebd87f69e0cda6a4939fc1c5e876e5d48cb505f52b213262e1314ba45c535a85 https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:f2889d99911b3e424b794e8bc4369a665b68504f2e7b6264baef9f1b12fc0de1 https://w3id.org/delphi/resource/evidence/levin-2023-goals-05--claim-test--dataset-2 http://purl.org/dc/terms/description checked for a deposited cell-state or stress matrix; 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