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https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU

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Content

@prefix this: <https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU> .
@prefix sub: <https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>
    a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci dataset-resolvability assessor (GPT-5.6 Sol)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "The full text specifies the geometry, interaction scheme, boundary conditions, and mechanical observables well enough for a focused replication and ablation analysis. The model-specific mechanism is testable now, but the broader attribution to biological alpha-helix networks is only partially resolved by this idealized simulation.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Reimplement the published coarse-grained network and compare intact, cracked, and mechanism-ablated variants for failure strain, yielded area, dissipated energy, and catastrophic crack growth. The mechanism is supported if alpha-helix unfolding creates enlarged dissipative zones that preserve failure strain, and refuted if flaw tolerance persists when that constitutive feature is removed.";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol on buehler-2009-helical-networks-01: partially-resolvable, resolvability 0.74";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Simulation evidence resolves the stated model more strongly than the broader class of real protein networks.",
      "The original LAMMPS implementation was available only on request, so reimplementation is required.",
      "The square single-helix mesh is not a faithful model of a particular biological network.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.78"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-01--gpt--dataset-1>;
    <https://w3id.org/delphi/ontology/hasScore> "0.741"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "partially-resolvable" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Analysis feasibility of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.72";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/analysis-feasibility";
    <https://w3id.org/delphi/ontology/hasScore> "0.72"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.6";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-adequacy";
    <https://w3id.org/delphi/ontology/hasScore> "0.6"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data existence of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.74";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-existence";
    <https://w3id.org/delphi/ontology/hasScore> "0.74"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.78";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.78"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.86";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
    <https://w3id.org/delphi/ontology/hasScore> "0.86"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-01> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-01--gpt--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "open simulation software in which the published coarse-grained model can be reimplemented";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: LAMMPS";
    prov:wasDerivedFrom <https://www.lammps.org/> .
  
  <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gpt-5.6-sol-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-2.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt>;
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol on buehler-2009-helical-networks-01: partially-resolvable, resolvability 0.74";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "BVzPa1WfKFusag+QHppXGb2c44TRnC8/ok1VgDYJVC4k34J7UYAhMdKYKeJYWxRfuzTWF4ciDOkSKT6vfafp+FfZ2/Kg6Lkf60y2zo83ZzH0O5tlEX/W8LaOFuvdkwtVb52arCMKCmPikn1qniRKxUKoI32CxXnWVrj2vMVB1wkBHLc3436uxjflgM2/Fi+Jlx1Hn18kZwjSU1J5AyXwp06S0K0PFiJFR95m1MHbZZvi+A7WzMPSIxo0xPWo1xePdGW9lZr+spW7NHAIV7Hy4w8fojLzbR/IgNtF58g5WB5bOJ/J9i+RdwJ4zRX8no5azO53+kZALKNjMEhafvTKHQ==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}