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https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://www.nanopub.org/nschema#hasProvenance
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/provenance
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://www.nanopub.org/nschema#hasPublicationInfo
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/pubinfo
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.nanopub.org/nschema#Nanopublication
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assertion
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.w3.org/ns/prov#SoftwareAgent
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
http://www.w3.org/2000/01/rdf-schema#label
delphisci dataset-resolvability assessor (GPT-5.6 Sol)
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
http://www.w3.org/ns/prov#actedOnBehalfOf
https://orcid.org/0009-0007-4948-9192
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/delphi/ontology/usesModel
https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
http://purl.org/dc/terms/description
The full text specifies the geometry, interaction scheme, boundary conditions, and mechanical observables well enough for a focused replication and ablation analysis. The model-specific mechanism is testable now, but the broader attribution to biological alpha-helix networks is only partially resolved by this idealized simulation.
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
http://www.w3.org/2000/01/rdf-schema#comment
Proposed test with existing data: Reimplement the published coarse-grained network and compare intact, cracked, and mechanism-ablated variants for failure strain, yielded area, dissipated energy, and catastrophic crack growth. The mechanism is supported if alpha-helix unfolding creates enlarged dissipative zones that preserve failure strain, and refuted if flaw tolerance persists when that constitutive feature is removed.
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
http://www.w3.org/2000/01/rdf-schema#label
GPT-5.6 Sol on buehler-2009-helical-networks-01: partially-resolvable, resolvability 0.74
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/ontology/evidenceAgainst
Simulation evidence resolves the stated model more strongly than the broader class of real protein networks.
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/ontology/evidenceAgainst
The original LAMMPS implementation was available only on request, so reimplementation is required.
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/ontology/evidenceAgainst
The square single-helix mesh is not a faithful model of a particular biological network.
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/ontology/hasConfidence
0.78
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/ontology/hasEvidence
https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-01--gpt--dataset-1
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/ontology/hasScore
0.741
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/ontology/hasVerdict
partially-resolvable
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility
http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility
http://www.w3.org/2000/01/rdf-schema#label
Analysis feasibility of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.72
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/analysis-feasibility
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility
https://w3id.org/delphi/ontology/hasScore
0.72
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy
http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy
http://www.w3.org/2000/01/rdf-schema#label
Data adequacy of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.6
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/data-adequacy
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy
https://w3id.org/delphi/ontology/hasScore
0.6
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence
http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence
http://www.w3.org/2000/01/rdf-schema#label
Data existence of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.74
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/data-existence
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence
https://w3id.org/delphi/ontology/hasScore
0.74
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power
http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power
http://www.w3.org/2000/01/rdf-schema#label
Discriminating power of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.78
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/discriminating-power
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power
https://w3id.org/delphi/ontology/hasScore
0.78
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability
http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability
http://www.w3.org/2000/01/rdf-schema#label
Operationalizability of buehler-2009-helical-networks-01 by GPT-5.6 Sol: 0.86
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/operationalizability
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability
https://w3id.org/delphi/ontology/hasScore
0.86
https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-01
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-01
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--analysis-feasibility
https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-01
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-adequacy
https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-01
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--data-existence
https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-01
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--discriminating-power
https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-01
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt--operationalizability
https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-01--gpt--dataset-1
http://purl.org/dc/terms/description
open simulation software in which the published coarse-grained model can be reimplemented
https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-01--gpt--dataset-1
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/EvidenceItem
https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-01--gpt--dataset-1
http://www.w3.org/2000/01/rdf-schema#label
Candidate dataset: LAMMPS
https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-01--gpt--dataset-1
http://www.w3.org/ns/prov#wasDerivedFrom
https://www.lammps.org/
https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium
http://purl.org/dc/terms/identifier
gpt-5.6-sol-medium
https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LanguageModel
https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium
http://www.w3.org/2000/01/rdf-schema#label
GPT-5.6 Sol
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/provenance
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assertion
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assertion
http://www.w3.org/ns/prov#wasDerivedFrom
https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-2.json
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assertion
http://www.w3.org/ns/prov#wasDerivedFrom
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assertion
http://www.w3.org/ns/prov#wasGeneratedBy
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assessment
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assessment
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.w3.org/ns/prov#Activity
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assessment
http://www.w3.org/ns/prov#qualifiedAssociation
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assessmentPlan
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assessment
http://www.w3.org/ns/prov#wasAssociatedWith
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/assessmentPlan
http://www.w3.org/ns/prov#hadPlan
https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/pubinfo
https://w3id.org/delphi/resource/domain/buehler-protein-materials
http://www.w3.org/2000/01/rdf-schema#label
buehler-protein-materials
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://purl.org/dc/terms/created
2026-11-08T04:48:50.317Z
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://purl.org/dc/terms/creator
https://orcid.org/0009-0007-4948-9192
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://purl.org/dc/terms/license
https://creativecommons.org/licenses/by/4.0/
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://purl.org/nanopub/x/hasNanopubType
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://purl.org/nanopub/x/introduces
https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-01--gpt
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
http://www.w3.org/2000/01/rdf-schema#label
GPT-5.6 Sol on buehler-2009-helical-networks-01: partially-resolvable, resolvability 0.74
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU
https://w3id.org/delphi/ontology/domain
https://w3id.org/delphi/resource/domain/buehler-protein-materials
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/sig
http://purl.org/nanopub/x/hasAlgorithm
RSA
https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/sig
http://purl.org/nanopub/x/hasPublicKey
MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB
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http://purl.org/nanopub/x/hasSignature
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https://w3id.org/np/RAJpdckbqCxsTxEVCA8lJsvQYvjkLXiP5_tqiPbWz5QiU/sig
http://purl.org/nanopub/x/hasSignatureTarget
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http://purl.org/nanopub/x/signedBy
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