https://w3id.org/np/RAF9Kdx1u3SU57tFxOkRh1Sh50yyUx2KiIue8UEGNaHq8
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAF9Kdx1u3SU57tFxOkRh1Sh50yyUx2KiIue8UEGNaHq8> .
@prefix sub: <https://w3id.org/np/RAF9Kdx1u3SU57tFxOkRh1Sh50yyUx2KiIue8UEGNaHq8/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
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@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/assessment/aristotle-ha05-05--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "Downloaded the pre-registered csv. A position column must both match the header rule and contain internal or external codes. Testis size is not treated as position. Birds and footed ovipara are scored separately. One group cannot support the conjunction.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: null share of coded birds with internal testes (n = 0, a row counts only when a position column uses an internal or external word). Interpretation: Inside the body means an internal or abdominal code, not a scrotum. Birds are Aves. Footed ovipara are reptiles and amphibians, the animals with feet that lay eggs. Fishes are out of scope. The claim is both groups, so a bird-only table cannot support it.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha05-05: inconclusive, confidence 0.75";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha05-05/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "A checksummed table with an explicit testis-position field. Testis mass, length, or asymmetry is not a position. Mammals are out of scope.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "none";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "At least one coded bird in a panel of 10 or more, or one coded reptile or amphibian in a panel of 5 or more, has scrotal or external testes.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "No anatomical prose will be added after the columns are seen.",
"The csv was not opened before this registration. The name, size 47713, and file id 49096 come from the Dryad API listing.";
<https://w3id.org/delphi/ontology/expectedObservation> "At least 20 birds and at least 5 reptiles or amphibians are coded, and every one of those codes says the testes are inside the body.";
<https://w3id.org/delphi/ontology/failCriterion> "Pre-registered. Refutes, confidence 0.80, if at least 10 birds are coded and at least one is external, or at least 5 footed ovipara are coded and at least one is external. Inconclusive, reason other, confidence 0.55, if the bird clause passes and the footed-ovipara clause has no codes, or the reverse: one half of the conjunction is unmeasured. Inconclusive, reason data-unavailable, confidence 0.75, if no position column exists. A dissection of a bird is not a code for internal testes. Inconclusive, reason underpowered, confidence 0.50, if a position column exists but fewer than 10 birds and fewer than 5 footed ovipara are coded.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.75"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-ha05-05--claim-test--dataset-1>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "If the pattern holds, every coded bird and every coded footed egg-layer has testes inside the body rather than in a scrotum.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Species or specimen rows with an explicit position code are the denominator. Support needs both groups fully internal at the floors above. A missing position column ends the test. The script does not infer position from the taxon.";
<https://w3id.org/delphi/ontology/passCriterion> "Pre-registered, before the csv is opened. The file is CALHIMdata.csv from Dryad doi:10.5061/dryad.75t05, API file id 49096, 47713 bytes, download https://datadryad.org/downloads/file_stream/49096. A position column has a header matching position, scrot, abdominal, internal, external, or location. Internal codes are internal, abdominal, body, or cavity. External codes are scrotal, scrotum, external, or inguinal. Birds are rows whose class, group, or taxon text matches Aves or bird. Footed ovipara are rows whose class or group matches reptile, amphibia, lizard, snake, turtle, or frog. Support, confidence 0.75, only if at least 20 birds are coded and all of them are internal, and at least 5 footed ovipara are coded and all of them are internal.";
<https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
<https://w3id.org/delphi/resource/claim/aristotle-ha05-05> <https://w3id.org/delphi/ontology/hasAssessment>
<https://w3id.org/delphi/resource/assessment/aristotle-ha05-05--claim-test> .
<https://w3id.org/delphi/resource/evidence/aristotle-ha05-05--claim-test--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "explicit testis position, if the table records it";
dc:license "CC0-1.0";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Calhim and Montgomerie testis asymmetry table";
prov:atLocation <https://datadryad.org/downloads/file_stream/49096>;
prov:wasDerivedFrom <https://datadryad.org/dataset/doi:10.5061/dryad.75t05>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:9559745fdcfc22d2bc6b2803a7109360b87f6ebb59667d626b7e42a908b1738d" .
}
sub:provenance {
<https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (Grok 4.7; cursor/aristotle-breeding-e-9310)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "Grok 4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha05-05/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
prov:qualifiedAssociation sub:plan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}
sub:pubinfo {
this: dc:created "2026-11-08T16:24:31.761Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-ha05-05--claim-test>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha05-05: inconclusive, confidence 0.75";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
sub:sig npx:hasAlgorithm "RSA";
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npx:hasSignatureTarget this:;
npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}