https://w3id.org/np/RAEG40AAZHMnCr8yTecW7xHu5dpsX1LDozXSQ_4QamLRY
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAEG40AAZHMnCr8yTecW7xHu5dpsX1LDozXSQ_4QamLRY> .
@prefix sub: <https://w3id.org/np/RAEG40AAZHMnCr8yTecW7xHu5dpsX1LDozXSQ_4QamLRY/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/assessment/aristotle-pa03-23--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "MorphoSource media and physical objects were searched with q=kidney and search_field=all_fields. Each hit's title, part, and description were required to contain 'kidney'. The binomial was placed with the GBIF species match, treating GBIF's class Testudines as the tortoise clade. Clade media totals were read from per_page=1 taxonomy facets so a zero kidney count could be compared with an archive that does hold those animals. No absence field was present. Shape words were scored only on bird kidney records.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: 1 species with a kidney-tagged media record (n = 1). Interpretation: Feathers map to Aves. Scales map to Actinopterygii, the bony fishes Aristotle called scaly, and scaly plates map to Squamata and Crocodylia. Sea and land tortoises map to Testudines, the stated exception. A kidney is a MorphoSource physical-object or media record whose own title, element, or description contains 'kidney', not a match that appears only in a cited paper title. Flattened kidney-like bodies are those bird records whose text says flat, flattened, or lobed. One species is not a test of 'all'.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-pa03-23: inconclusive, confidence 0.76";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-pa03-23/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "MorphoSource specimen or media metadata that carries a taxon and a title, element, or description. A skeletal archive that never mentions kidneys cannot be read as evidence that kidneys are absent. Wikipedia and single-species anecdotes are not admissible.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "biological";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "Kidney-tagged species at or above the pre-registered floor in Aves (5), Squamata (3), Crocodylia (3), or Actinopterygii (5).";
<https://w3id.org/delphi/ontology/evidenceAgainst> "The archive is not empty. Media totals are 8,553 Aves, 10,498 Squamata, 1,252 Crocodylia, 9,194 Actinopterygii, and 5,220 Testudines. Those are media records, not species scored for kidneys. A zero kidney count in a skeletal archive is not evidence that kidneys are lacking.",
"The media license field is empty. GBIF currently returns Testudines as the class rather than the order; the script maps either rank.",
"The only kidney-tagged record is media 000435760, part kidneys, for Gopherus polyphemus, a tortoise (GBIF class Testudines, family Testudinidae). One tortoise is below the pre-registered floors (5 bird species, 3 squamate, 3 crocodilian, or 5 ray-finned fish species) and there is no field that codes the kidney as absent, so the absence clause is not supported and not refuted.",
"The shape clause is untested: no bird kidney record exists on which to read flat, flattened, or lobed.";
<https://w3id.org/delphi/ontology/expectedObservation> "No kidney-tagged species outside Testudines in Aves, Squamata, Crocodylia, and Actinopterygii, with an explicit absence code on at least 20 species per clade, plus at least one bird record described as flat, flattened, or lobed.";
<https://w3id.org/delphi/ontology/failCriterion> "The absence clause refutes if kidney-tagged specimen metadata identifies the organ in at least 5 Aves species, or at least 3 Squamata species, or at least 3 Crocodylia species, or at least 5 Actinopterygii species. Those floors are the denominator: a smaller positive count is inconclusive (underpowered), and the species are named. The shape clause is untested when those words are missing; missing words do not refute it. Overall verdict is refutes only when the absence clause refutes and the shape clause supports. If absence refutes and shape is untested, the verdict is mixed and the clauses are named. If the API returns no taxonomy, or neither clause meets its floor and there is no explicit absence code, the verdict is inconclusive with reason data-unavailable or underpowered.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.76"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-pa03-23--claim-test--dataset-1>,
<https://w3id.org/delphi/resource/evidence/aristotle-pa03-23--claim-test--dataset-2>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "If the claim holds, animals with feathers, scales, or scaly plates have no kidney records except tortoises, and some birds are recorded as having flattened kidney-like bodies.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Count distinct binomials whose own metadata contains 'kidney', by clade. Apply the floors in the pass and fail criteria. Do not treat a zero search hit as absence. Score the shape clause only from the words flat, flattened, or lobed on bird kidney records.";
<https://w3id.org/delphi/ontology/passCriterion> "The absence clause supports only if MorphoSource metadata explicitly codes the kidney as absent for at least 20 species in each of Aves, Squamata, Crocodylia, and Actinopterygii, and codes it present for at least one tortoise species (Testudines). A search that merely returns no kidney-tagged specimens does not support absence, because the archive is mostly skeletons. The shape clause supports if at least one bird species with a kidney-tagged record has the words flat, flattened, or lobed in the specimen title or description. Overall supports only if both clauses support.";
<https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
<https://w3id.org/delphi/resource/claim/aristotle-pa03-23> <https://w3id.org/delphi/ontology/hasAssessment>
<https://w3id.org/delphi/resource/assessment/aristotle-pa03-23--claim-test> .
<https://w3id.org/delphi/resource/evidence/aristotle-pa03-23--claim-test--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "kidney-tagged specimen metadata and archive coverage by clade";
dc:license "unresolved. The one media record has an empty license field, and this run did not retrieve a separate rights statement.";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: MorphoSource media and physical-object search for kidney";
prov:atLocation <https://www.morphosource.org/api/media?f.taxonomy_gbif=Actinopterygii&per_page=1&page=1>,
<https://www.morphosource.org/api/media?f.taxonomy_gbif=Aves&per_page=1&page=1>, <https://www.morphosource.org/api/media?f.taxonomy_gbif=Crocodylia&per_page=1&page=1>,
<https://www.morphosource.org/api/media?f.taxonomy_gbif=Squamata&per_page=1&page=1>,
<https://www.morphosource.org/api/media?f.taxonomy_gbif=Testudines&per_page=1&page=1>,
<https://www.morphosource.org/api/media?q=kidney&search_field=all_fields&per_page=50&page=1>,
<https://www.morphosource.org/api/physical-objects?q=kidney&search_field=all_fields&per_page=50&page=1>;
prov:wasDerivedFrom <https://www.morphosource.org/>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:19114852437145bdc82a99cbf88a6675a4665760ba10954a622af33ae0cd2597",
"sha256:2b24c0be7d6aa8f0653f3f8130bf17f7fcc8d210b7b02e0b0cf45308a3793eca", "sha256:79faaa3d7c5894b2aa2595e71b73d8ed5b7e53bf102084325248fc89baf6aa10",
"sha256:8e912539147e566ac867bebbabb303f0d17c24f9ed8e17559a3a669261b631f0", "sha256:a80171ea4b7787fd472ddc2f8cbb731123707c936afac9c05c743d61ae33e69f",
"sha256:c46a36bebc1a17d9a6af62dc2ceb1dd434c76d28a71ebb03a103b4ad7789d23a", "sha256:d150fb97738eb89e876e99e720bc4a4b876c88a2994aa4b1812844e21a101969" .
<https://w3id.org/delphi/resource/evidence/aristotle-pa03-23--claim-test--dataset-2>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "place Gopherus polyphemus in Testudines";
dc:license "unresolved. The match response contains no license field.";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: GBIF species match for names returned by the kidney search";
prov:atLocation <https://api.gbif.org/v1/species/match?name=Gopherus+polyphemus>;
prov:wasDerivedFrom <https://www.gbif.org/>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:6743059439508949fee8a23792a51f503de7b0db18a719e1956481f4a8a0af38" .
}
sub:provenance {
<https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (grok-4.7; cursor/aristotle-anatomy-b-3f24)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "grok-4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-pa03-23/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
prov:qualifiedAssociation sub:plan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}
sub:pubinfo {
this: dc:created "2026-11-08T16:24:31.795Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-pa03-23--claim-test>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-pa03-23: inconclusive, confidence 0.76";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
npx:hasSignature "wmNEQBbrWNUZT0nZ8k6IimllX+/FVw+L1adkgqaSlht0oche7iqdYi8YSfsWbyepEk0Zyy74iCjdmtJAMBUGAcNC0CkKw/G/X4E4VNN5f4e4IWlPoF8D9Cmca8JZS8edNGlytSaGmGBkWRefKMsrHVapgH4PgrykBHccOSQC6rGqoTwe0KB+jGG6pxO4eBnEJsp4R9LfMRgcAnNBtqB7RzSiMErZLC1w3X4GXBuzFX6oOpSlmd2aBLa5oS08hnTqoKI7gSsGk7zKltI9/YYUc18hVfjVsBuAPHvIZleTTuBesFnYNYo0YCfvzxDraapf5rlYOv7vH6fHFV62ZYOMIQ==";
npx:hasSignatureTarget this:;
npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}