https://w3id.org/np/RA4SpFBr8SIuEiLGcdktPoXpA9Byt8AOiubVOYkfXsJjg
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RA4SpFBr8SIuEiLGcdktPoXpA9Byt8AOiubVOYkfXsJjg> .
@prefix sub: <https://w3id.org/np/RA4SpFBr8SIuEiLGcdktPoXpA9Byt8AOiubVOYkfXsJjg/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/assessment/aristotle-ha02-11--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "analysis.py matched AnAge and PanTHERIA column names to external ear, pinna, auricle, mammary gland, nipple, hemipenis, intromittent organ, copulatory organ and scrotal testis, and searched the FishBase manuals. No column matched. Adult body mass matched a nearby pattern and was not used. None of the four absence clauses was counted.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: 0 columns matching the pre-registered variable (n = 86). Interpretation: Quote: 'oviparous blooded quadrupeds are unprovided with ears, but possess only the passage for hearing; neither have they breasts, nor a copulatory organ, nor external testicles, but internal ones only; neither are they hair coated, but are in all cases covered with scaly plates.' The hearing passage and the scaly coat fix the group as scaled reptiles with four legs. Each absence is its own clause so that a true absence is not erased by a false one.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha02-11: inconclusive, confidence 0.86";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha02-11/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "A public species-level table from AnAge, FishBase, PanTHERIA, AVONET, GBIF, NCBI, WoRMS, PBDB, or a checksummed paper supplement, with taxon to order or finer and a column that names the structure itself. Licence stated. Tympanum is not an external ear. Testes-present is not testis position. PanTHERIA mammal traits do not cover this clade and are not a substitute.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "none";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "For any one of those four structures, at least one scored species in the group has it, with at least 15 species scored for that structure. A missing column does not disconfirm that clause.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "A tympanum column was not present and would not have been accepted as an external ear.",
"External ear, mammary gland, copulatory organ and external testis are all unscored. PanTHERIA is a mammal table and does not cover crocodilians, turtles and lizards.",
"The FishBase manuals are finfish codebooks. They do not name those four structures for oviparous quadrupeds.";
<https://w3id.org/delphi/ontology/expectedObservation> "Among at least 15 crocodilians, turtles and lizards scored for each structure, the counts of external ears, mammary glands, intromittent organs and external testicles are all zero.";
<https://w3id.org/delphi/ontology/failCriterion> "Pre-registered. A clause is refuted if the structure is scored present in one or more species with n >= 15 for that clause. All four clauses refuted: verdict refutes. At least one clause passed and at least one refuted: mixed. Column present but n < 15: inconclusive (underpowered) for that clause. No admissible column for any clause: inconclusive with reason data-unavailable. A nearby column is not scored and cannot refute.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.86"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-ha02-11--claim-test--dataset-1>,
<https://w3id.org/delphi/resource/evidence/aristotle-ha02-11--claim-test--dataset-2>,
<https://w3id.org/delphi/resource/evidence/aristotle-ha02-11--claim-test--dataset-3>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "If oviparous blooded quadrupeds have no external ears, no breasts, no copulatory organ and no external testicles, then a species-level anatomy table of crocodilians, turtles and lizards will score each of those four structures absent in every species.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Denominator is the number of in-scope species with a non-missing score for that structure. A clause passes only at a zero count with n >= 15, and is refuted by any presence at that n. Support requires all four. A split is mixed. All four refuted refutes the claim. No admissible column is data-unavailable.";
<https://w3id.org/delphi/ontology/passCriterion> "Pre-registered. Scope is oviparous blooded quadrupeds that the same sentence says are covered with scaly plates: Crocodylia, Testudines, and lizards (Sauria / Lacertilia / non-snake squamates). Serpentes are excluded because they are footless, not quadrupeds. Amphibia are excluded because they lack the scaly plates the sentence requires. Four clauses, each a universal absence. A clause is scored only from a column whose name or codebook is that structure: (E) external ear, pinna or auricle, not tympanum; (B) breast, mammary gland or nipple; (C) copulatory organ, intromittent organ, penis, phallus or hemipenis; (T) external or scrotal testicles, as opposed to internal testes. 'Testes present' without position is not clause T. A tympanum column is not clause E. A clause passes if the structure is absent in every scored species and n >= 15. The claim is supported only if all four clauses pass.";
<https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
<https://w3id.org/delphi/resource/claim/aristotle-ha02-11> <https://w3id.org/delphi/ontology/hasAssessment>
<https://w3id.org/delphi/resource/assessment/aristotle-ha02-11--claim-test> .
<https://w3id.org/delphi/resource/evidence/aristotle-ha02-11--claim-test--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "Column names checked against the pre-registered variable";
dc:license "CC BY 3.0. The fetched page https://genomics.senescence.info/legal.html says this work is licensed under a Creative Commons Attribution 3.0 Unported License, that the data sheets, including the observations in AnAge, are copyrighted, and that most content in HAGR is in the public domain.";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: AnAge, the Animal Ageing and Longevity Database";
prov:atLocation <https://genomics.senescence.info/legal.html>, <https://genomics.senescence.info/species/>,
<https://genomics.senescence.info/species/dataset.zip>;
prov:wasDerivedFrom <https://genomics.senescence.info/species/>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:708d25e725b8cb3625e0a5c03062bbb044985bea283af2d14433739dea9f8690",
"sha256:833190daa11a177ef557c70c70a746eab797303f775e168f64ad1ca72f623d05", "sha256:e3ddb66e32e973a79932859ba53013e8f60d957c6ec01c6eb573e3ea3018d630" .
<https://w3id.org/delphi/resource/evidence/aristotle-ha02-11--claim-test--dataset-2>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "Column names checked against the pre-registered variable";
dc:license "Not stated. The first 8000 characters of the retrieved file contain no license, copyright, or Creative Commons string.";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: PanTHERIA 1.0 WR05 ecological trait table";
prov:atLocation <https://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt>;
prov:wasDerivedFrom <https://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:36e64314cae0394a966a63b949504d1975ac5c5629e05e36c1b139b3348f044a" .
<https://w3id.org/delphi/resource/evidence/aristotle-ha02-11--claim-test--dataset-3>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "Codebook searched for the pre-registered variable; not a species-score table";
dc:license "Not stated on the fetched FishBase manual pages.";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: FishBase table manuals";
prov:atLocation <https://www.fishbase.se/manual/English/FishBaseThe_SPECIES_Table.htm>,
<https://www.fishbase.se/manual/English/fishbasemorphology_and_physiology.htm>, <https://www.fishbase.se/manual/English/fishbasereproduction00002700.htm>;
prov:wasDerivedFrom <https://www.fishbase.se/manual/English/FishBaseThe_SPECIES_Table.htm>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:2651a55498191d537a5afad930173accefe828c06bb4028a51c66bbe2ccb6813",
"sha256:4a250f19b12ce0cd384ab3648734831e1fd969a03894ce2d5c04137149bda4c5", "sha256:93ffbf8da39335434b66a4657e0e06d9ca7fcc3fe0206478fbbac27b4cc07687" .
}
sub:provenance {
<https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (grok-4.7; cursor/aristotle-life-history-i-b0f1)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "grok-4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha02-11/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
prov:qualifiedAssociation sub:plan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}
sub:pubinfo {
this: dc:created "2026-11-08T16:24:31.751Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-ha02-11--claim-test>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha02-11: inconclusive, confidence 0.86";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
npx:hasSignature "PD3nbPiy46MCkOeltHd9KkveR0WWnW6hia5vhv/+azgAk1dAL5vAKyd8ahcrDjm7x/6zukegKHPukvppBYBXo6+sHykqvxfpr+eHZe9OlWHNlnUAghHLWwTdehkLUaoHcDphLqzmfzQJbqWgakyr1wEe5WIxOAkFIw3jbQDcAbJ4CgZKbEidey0lIXhaLnQV2OKOku6IUElHVvyY/Cw+rES+Lc04LgNxj4tSL22KwXyqP9vlcNM0vcR3qQnZWP0BSGt6RCDrb2M2+FxDAG2+dJgJhpYfC+b2JOP0SJ1FMXwXdCyDPSG6ejoqMjSLkav8aByg46mCWkwLqXgF3PJK+A==";
npx:hasSignatureTarget this:;
npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}