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http://www.nanopub.org/nschema#Nanopublication
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assertion
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.w3.org/ns/prov#SoftwareAgent
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
http://www.w3.org/2000/01/rdf-schema#label
delphisci dataset-resolvability assessor (Gemini 4 Argon)
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
http://www.w3.org/ns/prov#actedOnBehalfOf
https://orcid.org/0009-0007-4948-9192
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/ontology/usesModel
https://w3id.org/delphi/resource/model/gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
http://purl.org/dc/terms/description
Bending flexibility and the entropic-to-energetic transition strain are well-defined physical observables that can be compared between isolated triple helices and packed microfibrils. Public X-ray and fiber-diffraction structures in the PDB allow independent molecular dynamics comparisons, and published single-molecule and single-fibril force-extension measurements exist across the literature. However, because only the abstract is open here and experimental measurements must be compiled across disparate protocols and hydration conditions, existing resources resolve the directional effect rather than the exact simulation protocol.
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
http://www.w3.org/2000/01/rdf-schema#comment
Proposed test with existing data: Compare the thermal bending persistence length and the low-strain entropic toe region of force-extension curves between isolated tropocollagen triple helices and assembled collagen microfibrils using molecular dynamics simulations of PDB collagen structures and published optical-tweezer versus AFM/MEMS fibril tensile data. The claim is confirmed if fibrillar packing increases persistence length by orders of magnitude and suppresses the entropic regime relative to energetic backbone stretching, and refuted if entropic bending remains comparable across both scales.
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
http://www.w3.org/2000/01/rdf-schema#label
Gemini 4 Argon on buehler-2007-tropocollagen-entropic-03: partially-resolvable, resolvability 0.67
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/ontology/evidenceAgainst
Experimental single-molecule optical tweezer data and single-fibril AFM or MEMS tensile data come from different laboratories, hydration states, and loading rates.
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/ontology/evidenceAgainst
The paper's specific coarse-grained and atomistic fibril simulation scripts are not publicly archived.
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/ontology/hasConfidence
0.75
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/ontology/hasEvidence
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-1
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/ontology/hasEvidence
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-2
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/ontology/hasScore
0.67
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/ontology/hasVerdict
partially-resolvable
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--analysis-feasibility
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
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http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility
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http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--analysis-feasibility
http://www.w3.org/2000/01/rdf-schema#label
Analysis feasibility of buehler-2007-tropocollagen-entropic-03 by Gemini 4 Argon: 0.65
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--analysis-feasibility
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
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https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/analysis-feasibility
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--analysis-feasibility
https://w3id.org/delphi/ontology/hasScore
0.65
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https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--data-adequacy
http://www.w3.org/2000/01/rdf-schema#label
Data adequacy of buehler-2007-tropocollagen-entropic-03 by Gemini 4 Argon: 0.55
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--data-adequacy
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
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dataset-resolvability/0.2.0/data-adequacy
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https://w3id.org/delphi/ontology/hasScore
0.55
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http://www.w3.org/2000/01/rdf-schema#label
Data existence of buehler-2007-tropocollagen-entropic-03 by Gemini 4 Argon: 0.65
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--data-existence
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
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dataset-resolvability/0.2.0/data-existence
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--data-existence
https://w3id.org/delphi/ontology/hasScore
0.65
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http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
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http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--discriminating-power
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https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--discriminating-power
http://www.w3.org/2000/01/rdf-schema#label
Discriminating power of buehler-2007-tropocollagen-entropic-03 by Gemini 4 Argon: 0.7
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--discriminating-power
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--discriminating-power
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/discriminating-power
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--discriminating-power
https://w3id.org/delphi/ontology/hasScore
0.7
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--operationalizability
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
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https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--operationalizability
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https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--operationalizability
http://www.w3.org/2000/01/rdf-schema#label
Operationalizability of buehler-2007-tropocollagen-entropic-03 by Gemini 4 Argon: 0.8
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--operationalizability
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--operationalizability
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/operationalizability
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--operationalizability
https://w3id.org/delphi/ontology/hasScore
0.8
https://w3id.org/delphi/resource/claim/buehler-2007-tropocollagen-entropic-03
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https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/delphi/resource/claim/buehler-2007-tropocollagen-entropic-03
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https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--analysis-feasibility
https://w3id.org/delphi/resource/claim/buehler-2007-tropocollagen-entropic-03
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--data-adequacy
https://w3id.org/delphi/resource/claim/buehler-2007-tropocollagen-entropic-03
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--data-existence
https://w3id.org/delphi/resource/claim/buehler-2007-tropocollagen-entropic-03
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--discriminating-power
https://w3id.org/delphi/resource/claim/buehler-2007-tropocollagen-entropic-03
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini--operationalizability
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-1
http://purl.org/dc/terms/description
experimental triple-helical collagen peptide and native fibrillar collagen diffraction structures for monomer versus microfibril simulations
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-1
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/EvidenceItem
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-1
http://www.w3.org/2000/01/rdf-schema#label
Candidate dataset: RCSB Protein Data Bank
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-1
http://www.w3.org/ns/prov#wasDerivedFrom
https://www.rcsb.org/
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-2
http://purl.org/dc/terms/description
open molecular dynamics engine for comparing bending fluctuations and stretching regimes of isolated tropocollagen versus packed fibrils
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-2
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/EvidenceItem
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-2
http://www.w3.org/2000/01/rdf-schema#label
Candidate dataset: GROMACS Molecular Dynamics Package
https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gemini--dataset-2
http://www.w3.org/ns/prov#wasDerivedFrom
https://www.gromacs.org/
https://w3id.org/delphi/resource/model/gemini-4-argon-medium
http://purl.org/dc/terms/identifier
gemini-4-argon-medium
https://w3id.org/delphi/resource/model/gemini-4-argon-medium
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LanguageModel
https://w3id.org/delphi/resource/model/gemini-4-argon-medium
http://www.w3.org/2000/01/rdf-schema#label
Gemini 4 Argon
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/provenance
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assertion
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assertion
http://www.w3.org/ns/prov#wasDerivedFrom
https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-2.json
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assertion
http://www.w3.org/ns/prov#wasDerivedFrom
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assertion
http://www.w3.org/ns/prov#wasGeneratedBy
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assessment
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assessment
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.w3.org/ns/prov#Activity
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assessment
http://www.w3.org/ns/prov#qualifiedAssociation
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assessmentPlan
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assessment
http://www.w3.org/ns/prov#wasAssociatedWith
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/assessmentPlan
http://www.w3.org/ns/prov#hadPlan
https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/pubinfo
https://w3id.org/delphi/resource/domain/buehler-protein-materials
http://www.w3.org/2000/01/rdf-schema#label
buehler-protein-materials
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4
http://purl.org/dc/terms/created
2026-11-08T04:48:50.317Z
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4
http://purl.org/dc/terms/creator
https://orcid.org/0009-0007-4948-9192
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4
http://purl.org/dc/terms/license
https://creativecommons.org/licenses/by/4.0/
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4
http://purl.org/nanopub/x/hasNanopubType
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4
http://purl.org/nanopub/x/introduces
https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gemini
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4
http://www.w3.org/2000/01/rdf-schema#label
Gemini 4 Argon on buehler-2007-tropocollagen-entropic-03: partially-resolvable, resolvability 0.67
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4
https://w3id.org/delphi/ontology/domain
https://w3id.org/delphi/resource/domain/buehler-protein-materials
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/sig
http://purl.org/nanopub/x/hasAlgorithm
RSA
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/sig
http://purl.org/nanopub/x/hasPublicKey
MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/sig
http://purl.org/nanopub/x/hasSignature
ORsirb0WzCmaNz7T4C2AyglP5qwcr6iprBxMjXpdLCtbn3m1H+AKp+Tlwf7mGDp8/jkC4HXd5ZZcEGGx/8PEkUujkFNfg7HlkdrjlnRkdEYM8bOAi+2EBNyYeGAyt1VEsAK6zGZh+IgTmrVRPvgsV3z3rZTB/L5tGCPhQGgzsMoXlNUwz4qSD3/ri7rzMi4MTu1ou4pWCbDf6uBx73ikLUyp2+bpBRx4TKAdW5g45751DM2oNWnGJSiLN8Cg+6ecgEjYySXbbJiW48IhpHkLFT8lo0NayOMmzeacXumaFQ7tkTLEcUXzzFbtsb7RKxLmJmagVzDZHPKb0+4etxbXGA==
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/sig
http://purl.org/nanopub/x/hasSignatureTarget
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4
https://w3id.org/np/RAxxZFUNsLWWap2T0DY7XJ4Pyl7OYE8uwRXbLHYJxRNA4/sig
http://purl.org/nanopub/x/signedBy
https://orcid.org/0009-0007-4948-9192