@prefix this: . @prefix sub: . @prefix np: . @prefix rdf: . @prefix prov: . @prefix npx: . @prefix dc: . @prefix xsd: . sub:Head { this: a np:Nanopublication; np:hasAssertion sub:assertion; np:hasProvenance sub:provenance; np:hasPublicationInfo sub:pubinfo . } sub:assertion { a prov:SoftwareAgent; "delphisci dataset-resolvability assessor (Gemini 4 Argon)"; prov:actedOnBehalfOf ; . a ; dc:description "Non-linear, strain-dependent elasticity of single tropocollagen molecules is a well-defined mechanical property that can be tested both by re-running atomistic pulling simulations and by analyzing published optical-tweezers and AFM force-extension data in the literature. While the overall strain-hardening behavior is readily verifiable, testing the full interaction between specific amino-acid sequence motifs and applied deformation state remains partially limited by the lack of a unified repository of sequence-resolved single-molecule force curves."; dc:subject ; "Proposed test with existing data: Fit tangent modulus as a function of applied strain (or force) to published single-molecule optical-tweezers/AFM force-extension curves of type I tropocollagen and to steered MD trajectories across multiple sequence segments, confirming the claim if the tangent modulus changes systematically across low-strain entropic, medium-strain uncoiling, and high-strain backbone-stretching regimes."; "Gemini 4 Argon on buehler-2009-tropocollagen-sequencing-03: partially-resolvable, resolvability 0.76"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0"; "High pulling speeds in atomistic MD shift the apparent strain thresholds at which stiffening and uncoiling occur compared to quasi-static experiments.", "Single-molecule force spectroscopy curves of collagen are scattered across published figures rather than curated in a single standardized open database."; "0.82"^^xsd:double; , , ; "0.762"^^xsd:double; "partially-resolvable" . a ; dc:isPartOf ; dc:subject ; "Analysis feasibility of buehler-2009-tropocollagen-sequencing-03 by Gemini 4 Argon: 0.8"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/analysis-feasibility"; "0.8"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Data adequacy of buehler-2009-tropocollagen-sequencing-03 by Gemini 4 Argon: 0.68"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/data-adequacy"; "0.68"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Data existence of buehler-2009-tropocollagen-sequencing-03 by Gemini 4 Argon: 0.72"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/data-existence"; "0.72"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Discriminating power of buehler-2009-tropocollagen-sequencing-03 by Gemini 4 Argon: 0.78"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/discriminating-power"; "0.78"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Operationalizability of buehler-2009-tropocollagen-sequencing-03 by Gemini 4 Argon: 0.85"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/operationalizability"; "0.85"^^xsd:double . , , , , , . a ; dc:description "Collagen triple-helix structures for initializing atomistic pulling simulations across low to high strain regimes"; "Candidate dataset: RCSB Protein Data Bank"; prov:wasDerivedFrom . a ; dc:description "Reference sequences for human type I collagen chains used to parameterize sequence-specific segments"; "Candidate dataset: UniProt Knowledgebase"; prov:wasDerivedFrom . a ; dc:description "Open molecular dynamics suite to compute force-extension curves and strain-dependent tangent moduli of tropocollagen"; "Candidate dataset: GROMACS"; prov:wasDerivedFrom . a ; dc:identifier "gemini-4-argon-medium"; "Gemini 4 Argon" . } sub:provenance { sub:assertion prov:wasAttributedTo ; prov:wasDerivedFrom , ; prov:wasGeneratedBy sub:assessment . sub:assessment a prov:Activity; prov:qualifiedAssociation sub:assessmentPlan; prov:wasAssociatedWith . sub:assessmentPlan prov:hadPlan . } sub:pubinfo { "buehler-protein-materials" . this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime; dc:creator ; dc:license ; npx:hasNanopubType ; npx:introduces ; "Gemini 4 Argon on buehler-2009-tropocollagen-sequencing-03: partially-resolvable, resolvability 0.76"; . sub:sig npx:hasAlgorithm "RSA"; npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB"; npx:hasSignature "w+hk5/8ozT1CCDe+qpXuD1gEGRxGzQP0oS5rtY08i7zaTDKpKs3s52ezLv13Gn8Hc3IbC8wy2nZjz51PIyVANH9PDofKma49H978NWQw/9MO+PkNk3XpJhsKPYxBTXjCeG8vkt1viHi7dB9z2o2SwCFqOEkTbJH9cFf8+I8XXOmHx88o3FRqr4zxsfboiTVkCWJiu2ilE5srY40XoiSYFmPMbav+xhP0NQeZXwu0n3stdwGsu+Kq9TfH2YdVibUymD1q/KpDzqq89nEhloISJbyhtDi8EJ3pNgFLOGZV3uyhDUZfgGdccYNxk/95rKQWfZ09my954Sav7hhg+f+86Q=="; npx:hasSignatureTarget this:; npx:signedBy . }