https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4/Head https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4 http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4/assertion https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4 http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4/provenance https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4 http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4/pubinfo https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAwdhqGXIQAv6cxSe2ny8-g4sbq9-P-3RGHZWNYhnsGi4/assertion https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/ns/prov#SoftwareAgent https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium http://www.w3.org/2000/01/rdf-schema#label delphisci dataset-resolvability assessor (Gemini 4 Argon) https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium http://www.w3.org/ns/prov#actedOnBehalfOf https://orcid.org/0009-0007-4948-9192 https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium https://w3id.org/delphi/ontology/usesModel https://w3id.org/delphi/resource/model/gemini-4-argon-medium https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini http://purl.org/dc/terms/description Human type I collagen sequences and triple-helical structural templates are openly available in UniProt and the PDB, and open MD codes with standard CHARMM parameters can test whether motif substitutions significantly alter triple-helix stiffness. However, because the original simulation scripts are not archived and the abstract omits the exact motif identities and pulling protocol, independent verification requires reconstructing the setup or comparing against indirect structural flexibility proxies in PDB crystal structures. https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini http://purl.org/dc/terms/subject https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0 https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini http://www.w3.org/2000/01/rdf-schema#comment Proposed test with existing data: Construct atomistic triple-helical tropocollagen segments for distinct Gly-X-Y sequence motifs from human type I collagen using PDB triple-helix templates and UniProt sequences, run steered molecular dynamics tensile pulls in GROMACS or NAMD with CHARMM force fields, and test whether the tangent Young's modulus varies significantly across motifs. https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini http://www.w3.org/2000/01/rdf-schema#label Gemini 4 Argon on buehler-2009-tropocollagen-sequencing-01: partially-resolvable, resolvability 0.67 https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini https://w3id.org/delphi/ontology/assessmentType dataset-resolvability/0.2.0 https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini https://w3id.org/delphi/ontology/evidenceAgainst Direct single-molecule experimental stiffness measurements resolved at the level of individual Gly-X-Y motifs do not exist in public repositories, making the test reliant on MD re-implementation. https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini https://w3id.org/delphi/ontology/evidenceAgainst The abstract alone does not specify which four exact Gly-X-Y motifs, pulling velocities, or boundary conditions were used in the original simulations. https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini https://w3id.org/delphi/ontology/hasConfidence 0.78 https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/buehler-2009-tropocollagen-sequencing-01--gemini--dataset-1 https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-01--gemini https://w3id.org/delphi/ontology/hasEvidence 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