@prefix this: <https://w3id.org/np/RAw1D4dRMIFSEcX89kYKABMrv6rywDSgDOVV9zzXOzfxo> .
@prefix sub: <https://w3id.org/np/RAw1D4dRMIFSEcX89kYKABMrv6rywDSgDOVV9zzXOzfxo/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
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    a prov:SoftwareAgent;
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    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "The numerical prediction is directly falsifiable using standard polymer analyses, and published experimental estimates make at least a restricted reanalysis plausible. Public raw data and full-length-molecule coverage are uncertain and condition dependent, preventing a confident claim that the stated scope is fully resolvable now.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Estimate persistence length from independent single-molecule contour fluctuations, bending data, or low-force force-extension curves for full-length type-I tropocollagen, with uncertainty and condition-specific estimates. Values statistically compatible with 16 nm support the prediction, while precise values materially separated from 16 nm refute it under the measured conditions.";
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Many available records concern collagen fibrils or short peptides rather than isolated full-length tropocollagen.",
      "Persistence length depends on solvent, ionic conditions, temperature, and analysis model.",
      "Published measurements may provide only summary estimates rather than reusable raw coordinates.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.77"^^xsd:double;
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      <https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-02--gpt--dataset-2>;
    <https://w3id.org/delphi/ontology/hasScore> "0.709"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "partially-resolvable" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2007-tropocollagen-entropic-02 by GPT-5.6 Sol: 0.47";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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    <https://w3id.org/delphi/ontology/hasScore> "0.47"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data existence of buehler-2007-tropocollagen-entropic-02 by GPT-5.6 Sol: 0.58";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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    <https://w3id.org/delphi/ontology/hasScore> "0.58"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2007-tropocollagen-entropic-02 by GPT-5.6 Sol: 0.84";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.84"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2007-tropocollagen-entropic-02 by GPT-5.6 Sol: 0.93";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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    <https://w3id.org/delphi/ontology/hasScore> "0.93"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2007-tropocollagen-entropic-02> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt>,
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      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt--data-adequacy>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-02--gpt--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "repository to locate public imaging or single-molecule mechanics datasets and supplements";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: BioStudies";
    prov:wasDerivedFrom <https://www.ebi.ac.uk/biostudies/> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-02--gpt--dataset-2>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "experimental collagen structures useful for geometry, though not sufficient alone for full-length persistence length";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
    prov:wasDerivedFrom <https://www.rcsb.org/> .
  
  <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gpt-5.6-sol-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-1.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
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      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-02--gpt>;
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol on buehler-2007-tropocollagen-entropic-02: partially-resolvable, resolvability 0.71";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
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}