https://w3id.org/np/RAtxt_mmeBF2slrhT3bK9qAPnFc4q2kMPc0wbD7f6KQzU
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAtxt_mmeBF2slrhT3bK9qAPnFc4q2kMPc0wbD7f6KQzU> .
@prefix sub: <https://w3id.org/np/RAtxt_mmeBF2slrhT3bK9qAPnFc4q2kMPc0wbD7f6KQzU/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/assessment/aristotle-ha01-16--claim-test--pr-99>
a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "Parsed the Uberon sensory-minimal and cranial-minimal OBO subsets. Passage relations are typedefs whose names contain connect, continuous or opens. part_of does not count, and nerves and veins are ignored. The palate clause needs the pharyngotympanic tube linked to the nasopharynx, pharynx or palate. A passage from the tympanic cavity or middle ear to the cranial cavity or brain refutes the denial. Inner-ear channels do not vote.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: 0 passage relations from the tube or middle ear (n = 2489, OBO relationship lines with typedef names). Interpretation: The text compares the ear to a trumpet shell and a jar, then says this receptacle has no passage to the brain but does have one to the palate, while a vein runs from the brain toward it. The cavity that opens on the pharynx is the tympanic cavity, via the pharyngotympanic tube, which ends in the nasopharynx above the soft palate. That is the palate passage. The inner ear does not open on the palate, so it is not the receptacle the sentence is about. 'Passage' means a connection relation, not a nerve and not a vein.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha01-16 (pr-99): inconclusive, confidence 0.65";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha01-16/pr-99/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "The public Uberon anatomy subsets that include ear and cranial terms, with typedef names for relations, CC BY, independent of Aristotle. Imaging series are not used.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "biological";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "No pharyngeal passage relation, or a passage relation from the middle-ear cavity to the cranial cavity or brain.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "No relation axioms were read before registration. Only subset URLs and file sizes were checked.",
"Uberon states a canonical vertebrate anatomy. It is not a series of dissections, and it is strongest for the tetrapod middle ear rather than for every animal with an ear.";
<https://w3id.org/delphi/ontology/expectedObservation> "A passage relation links the pharyngotympanic tube or tympanic cavity to the nasopharynx, pharynx or palate, and no passage relation links the tympanic cavity or middle ear to the cranial cavity or brain.";
<https://w3id.org/delphi/ontology/failCriterion> "Pre-registered. Refute if the tympanic cavity or middle ear has a passage relation to the cranial cavity or brain, or if the tube and the tympanic cavity have no passage relation to the nasopharynx, pharynx or palate. If the subsets contain none of these terms, or contain the terms but no passage typedefs, the verdict is inconclusive with reason not-operationalizable. If the files cannot be downloaded, inconclusive with reason data-unavailable. A cochlear aqueduct or other inner-ear channel, if present, is reported and does not set the verdict: the receptacle that could open on the palate is the middle-ear cavity, which is the reading fixed here.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.65"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-ha01-16--claim-test--pr-99--dataset-1>,
<https://w3id.org/delphi/resource/evidence/aristotle-ha01-16--claim-test--pr-99--dataset-2>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "If the ear's receptacle opens to the palate and not to the brain, the middle-ear cavity is connected by a passage relation to the nasopharynx or palate and is not connected by a passage relation to the cranial cavity.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Parse OBO terms and typedefs. Resolve relationship targets through the exclamation-comment names and ids. Count only relations whose typedef name contains connect, continuous or opens. Ignore nerves and veins. Inner-ear channels are recorded and do not vote.";
<https://w3id.org/delphi/ontology/passCriterion> "Pre-registered. In the Uberon sensory-minimal and cranial-minimal subsets, the pharyngotympanic tube (name or exact synonym Eustachian tube or auditory tube) has a passage relation to a nasopharynx, pharynx or palate term, or the tympanic cavity has a passage relation to the tube and the tube has a passage relation to the nasopharynx, pharynx or palate. Passage relations are those whose typedef name contains connect, continuous or opens. part_of and is_a do not count. And the tympanic cavity and middle ear have no passage relation to the cranial cavity or to the brain. Nerves and veins are ignored, because the text already allows a vein toward the ear and denies a passage. Both conditions together are a pass.";
<https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
<https://w3id.org/delphi/resource/claim/aristotle-ha01-16> <https://w3id.org/delphi/ontology/hasAssessment>
<https://w3id.org/delphi/resource/assessment/aristotle-ha01-16--claim-test--pr-99> .
<https://w3id.org/delphi/resource/evidence/aristotle-ha01-16--claim-test--pr-99--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "ear, tube and cranial anatomy relations";
dc:license "CC BY 3.0";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: uberon-sensory-minimal.obo";
prov:atLocation <http://purl.obolibrary.org/obo/uberon/subsets/sensory-minimal.obo>;
prov:wasDerivedFrom <https://obophenotype.github.io/uberon/current_release/>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:782b11876a9e7a6b478760ccd4f8f4840c1aab0328a1091ce7427657e111ae12" .
<https://w3id.org/delphi/resource/evidence/aristotle-ha01-16--claim-test--pr-99--dataset-2>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "ear, tube and cranial anatomy relations";
dc:license "CC BY 3.0";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: uberon-cranial-minimal.obo";
prov:atLocation <http://purl.obolibrary.org/obo/uberon/subsets/cranial-minimal.obo>;
prov:wasDerivedFrom <https://obophenotype.github.io/uberon/current_release/>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:67786a671768c8c8f09d9d321cbc0f9faf6e761aff253dd1710316d1e7e3aa43" .
}
sub:provenance {
<https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (grok-4.7; cursor/aristotle-biology-tests-305c)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "grok-4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha01-16/pr-99/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
prov:qualifiedAssociation sub:plan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}
sub:pubinfo {
this: dc:created "2026-11-08T16:24:31.748Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-ha01-16--claim-test--pr-99>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha01-16 (pr-99): inconclusive, confidence 0.65";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
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npx:hasSignatureTarget this:;
npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
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