https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU/Head https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU/assertion https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU/provenance https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU/pubinfo https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAtf0Fs65O71xbLmdQ3Y62crQavyQCkKlH1oNuQqDdwsU/assertion https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/ns/prov#SoftwareAgent https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium http://www.w3.org/2000/01/rdf-schema#label delphisci dataset-resolvability assessor (Gemini 4 Argon) https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium http://www.w3.org/ns/prov#actedOnBehalfOf https://orcid.org/0009-0007-4948-9192 https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium https://w3id.org/delphi/ontology/usesModel https://w3id.org/delphi/resource/model/gemini-4-argon-medium https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gemini http://purl.org/dc/terms/description The partitioning of MaSp1 and MaSp2 sequences into beta-sheet-forming poly-Ala tracts and 3_1-helix/beta-turn Gly-rich regions maps onto standard structural observables (DSSP classes and Ramachandran phi-psi angles). Although the authors' REMD coordinates were not deposited in the PDB, the sequences are public in UniProt, independent solid-state NMR and X-ray data exist, and REMD can be re-run in GROMACS. It is rated partially resolvable because re-running converged multi-chain REMD requires substantial compute and only the abstract is vendored locally. https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gemini http://purl.org/dc/terms/subject https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gemini http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gemini http://www.w3.org/2000/01/rdf-schema#comment Proposed test with existing data: Retrieve Nephila clavipes MaSp1 and MaSp2 repeat sequences from UniProt, perform replica-exchange MD (or inspect solid-state NMR chemical-shift constraints in BMRB), and compute residue-specific secondary structure via DSSP and backbone dihedral distributions on Ramachandran plots separately for poly-Ala segments and Gly-rich motifs. 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is computationally intensive and sensitive to force-field backbone dihedral potentials. https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gemini https://w3id.org/delphi/ontology/evidenceAgainst The replica-exchange MD structural ensemble generated in the 2010 study is not deposited in the PDB or a public trajectory repository. https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gemini https://w3id.org/delphi/ontology/hasConfidence 0.85 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gemini https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gemini--dataset-1 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gemini https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gemini--dataset-2 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