https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/Head https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/assertion https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/provenance https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/pubinfo https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/assertion https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test http://purl.org/dc/terms/description Seven loci (y, w, bi, v, m, s, B) looked up by symbol; 1915 map distance for each of the 21 pairs from the book's percentages versus genomic distance between gene midpoints (Mb); Spearman rank correlation. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/Assessment https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test http://www.w3.org/2000/01/rdf-schema#comment Measured: 0.9662 Spearman rho between 1915 map distance and genomic distance over 21 locus pairs (n = 21, Pearson r 0.972; 7 loci on one chromosome). Interpretation: The 1915 map values are the ones quoted in the claims file from the book (yellow-white 1, white-bifid 5, yellow-bifid 6, white-miniature 33, miniature-Bar 22, vermilion-sable 10, sable-Bar 14), not FlyBase's recombination_loc column, which for most genes is interpolated from cytology and would be circular. The test is one chromosome and seven loci: it tests the law where Morgan stated it, not genome-wide. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test http://www.w3.org/2000/01/rdf-schema#label Claim test of morgan1915-04: supports, confidence 0.8 https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test http://www.w3.org/2000/01/rdf-schema#seeAlso https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/evolution-after-darwin/morgan1915-04/result.json https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1 https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/admissibleDatasets Planned datasets: flybase-gene-map-table https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/assessmentType claim-test/0.1.0 https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/dataKind biological https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/disconfirmingObservation Spearman < 0.70: refutes. Between 0.70 and 0.90: mixed. Any of the seven loci not found in the map table with an X-chromosome sequence location: inconclusive. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/evidenceAgainst Seven loci on the X only: it tests the law where Morgan stated it. Genome-wide, recombination rate varies along chromosomes (hotspots, centromere suppression), so the relation is monotone, not linear. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The 1915 map values come from the book's quoted percentages, not from FlyBase's recombination_loc column, which is largely interpolated from cytology. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/evidenceAgainst sable and Bar are resolved through the FlyBase synonym table to Ype (Yippee) and B-H1 (BarH1); the Bar mutation itself is a duplication of 16A with no single coordinate, so B-H1 stands for its position. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/expectedObservation Over the 21 pairs of the seven loci, Spearman rank correlation between 1915 map distance and genomic distance (midpoints of FlyBase sequence locations on X, Release 6) is >= 0.90: supports. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/failCriterion Spearman < 0.70: refutes. Between 0.70 and 0.90: mixed. Any of the seven loci not found in the map table with an X-chromosome sequence location: inconclusive. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/hasConfidence 0.8 https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/hasVerdict supports https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/hypothesis If crossing over between two factors increases with their distance apart, the 1915 X-chromosome map distances between yellow, white, bifid, vermilion, miniature, sable and Bar (read from the book's own percentages: y 0, w 1, bi 6, v 32, m 34, s 42, B 56) increase with the genomic distance between those genes. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/inferenceMethod Seven loci (y, w, bi, v, m, s, B) looked up by symbol; 1915 map distance for each of the 21 pairs from the book's percentages versus genomic distance between gene midpoints (Mb); Spearman rank correlation. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/passCriterion Over the 21 pairs of the seven loci, Spearman rank correlation between 1915 map distance and genomic distance (midpoints of FlyBase sequence locations on X, Release 6) is >= 0.90: supports. https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/ontology/preregistered true https://w3id.org/delphi/resource/claim/morgan1915-04 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 http://purl.org/dc/terms/description https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 http://purl.org/dc/terms/license CC BY 4.0 https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 http://www.w3.org/2000/01/rdf-schema#label Dataset: FlyBase precomputed gene map table FB2026_03 (D. melanogaster Release 6 coordinates) https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://s3ftp.flybase.org/releases/current/precomputed_files/genes/gene_map_table_fb_2026_03.tsv.gz https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://s3ftp.flybase.org/releases/current/precomputed_files/synonyms/fb_synonym_fb_2026_03.tsv.gz https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 http://www.w3.org/ns/prov#wasDerivedFrom https://flybase.org/downloads/ https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:1fc2f20e1fbf82bbec198f268aeff8bfcea3345f7777e2b9ded43a801ddada5c https://w3id.org/delphi/resource/evidence/morgan1915-04--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:e229f1a3be7124fa04fd70e04db4432e9bddcde38408d8840af2caedd002ecce https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/provenance https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/ns/prov#SoftwareAgent https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1 http://www.w3.org/2000/01/rdf-schema#label delphisci claim tester (claude-fable-5.1; evolution-after-darwin-tests-1) https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1 http://www.w3.org/ns/prov#actedOnBehalfOf https://orcid.org/0009-0007-4948-9192 https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1 https://w3id.org/delphi/ontology/usesModel https://w3id.org/delphi/resource/model/claude-fable-5-1 https://w3id.org/delphi/resource/model/claude-fable-5-1 http://purl.org/dc/terms/identifier claude-fable-5.1 https://w3id.org/delphi/resource/model/claude-fable-5-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LanguageModel https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/assertion http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1 https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/assertion http://www.w3.org/ns/prov#wasDerivedFrom https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/evolution-after-darwin/morgan1915-04/result.json https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/assertion http://www.w3.org/ns/prov#wasGeneratedBy https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/test https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/plan http://www.w3.org/ns/prov#hadPlan https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/test http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/ns/prov#Activity https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/test http://www.w3.org/ns/prov#qualifiedAssociation https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/plan https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/test http://www.w3.org/ns/prov#wasAssociatedWith https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1 https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/pubinfo https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://purl.org/dc/terms/created 2026-11-08T16:24:31.868Z https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://purl.org/dc/terms/creator https://orcid.org/0009-0007-4948-9192 https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://purl.org/nanopub/x/hasNanopubType https://w3id.org/delphi/ontology/Assessment https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://purl.org/nanopub/x/introduces https://w3id.org/delphi/resource/assessment/morgan1915-04--claim-test https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA http://www.w3.org/2000/01/rdf-schema#label Claim test of morgan1915-04: supports, confidence 0.8 https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA https://w3id.org/delphi/ontology/domain https://w3id.org/delphi/resource/domain/evolution-after-darwin https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/sig http://purl.org/nanopub/x/hasAlgorithm RSA https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/sig http://purl.org/nanopub/x/hasPublicKey MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/sig http://purl.org/nanopub/x/hasSignature iOTf50fHjLjopCa+ZOx3TfDjmkaEpDj6trgtEFkLVp+X/KxGBLmPZE5UhAJlDZTz2aCJNk6kCZx7Uz+pLDs8oLRnqp6wwBQKCWPDb6XLPQRVws7G56Xkt17BIHc4Zu9aHRVHL3Rx9UyJwoiEm6qxNTmfEYuuktHdY5rYFvA9xDhA2KwTato7lO2t+geVf/0D+netfZN3bTOh4gCoWjkOTvHU1c+qrIDSyID9zQPtIIzMjZiLfDRG0uL7JOQuWhptBpaC8Xsn8vePfaplpH3TBweHr7KDIZLdXdNOniAc/ELuyqA6vrn/S+WJigyGHqhX/GBM56PB4j07PGC/o92Npg== https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/sig http://purl.org/nanopub/x/hasSignatureTarget https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA https://w3id.org/np/RAscAYxnNIO0454VneCKWHW6sq6-HLGGH6cz9_bgbYMfA/sig http://purl.org/nanopub/x/signedBy https://orcid.org/0009-0007-4948-9192