@prefix this: <https://w3id.org/np/RArVHqhTUSGVNr3GbklqHZlDP5esIzPu0izaCupI4k4hs> .
@prefix sub: <https://w3id.org/np/RArVHqhTUSGVNr3GbklqHZlDP5esIzPu0izaCupI4k4hs/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/assessment/morgan1915-08--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
    dc:description "Genomic start coordinates of the seven genes on the X, checked for strict monotonicity in the 1915 map order.";
    <http://www.w3.org/2000/01/rdf-schema#comment> "Measured: 1 1 if the seven loci are in 1915 map order on the genome, else 0 (n = 7, exact (ordering)). Interpretation: A pure order test, independent of distances. Gene symbols looked up in the FlyBase map table: y, w, bi, v, m, s, B.";
    <http://www.w3.org/2000/01/rdf-schema#label> "Claim test of morgan1915-08: supports, confidence 0.95";
    <http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/evolution-after-darwin/morgan1915-08/result.json>;
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1>;
    <https://w3id.org/delphi/ontology/admissibleDatasets> "Planned datasets: flybase-gene-map-table";
    <https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
    <https://w3id.org/delphi/ontology/dataKind> "biological";
    <https://w3id.org/delphi/ontology/disconfirmingObservation> "Any adjacent pair out of order: refutes. Any locus missing from the table: inconclusive.";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Seven loci; a finer test would take every locus on the 1915 frontispiece map, which is not in the claims file.";
    <https://w3id.org/delphi/ontology/expectedObservation> "The genomic start coordinates of the seven genes (FlyBase sequence_loc, X chromosome) are strictly increasing in the order y, w, bi, v, m, s, B (or strictly decreasing, orientation being a convention): supports.";
    <https://w3id.org/delphi/ontology/failCriterion> "Any adjacent pair out of order: refutes. Any locus missing from the table: inconclusive.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.95"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/morgan1915-08--claim-test--dataset-1>;
    <https://w3id.org/delphi/ontology/hasVerdict> "supports";
    <https://w3id.org/delphi/ontology/hypothesis> "If the order of factors on the 1915 map is real, the seven X-chromosome loci yellow, white, bifid, vermilion, miniature, sable, Bar lie on the genome in that order.";
    <https://w3id.org/delphi/ontology/inferenceMethod> "Genomic start coordinates of the seven genes on the X, checked for strict monotonicity in the 1915 map order.";
    <https://w3id.org/delphi/ontology/passCriterion> "The genomic start coordinates of the seven genes (FlyBase sequence_loc, X chromosome) are strictly increasing in the order y, w, bi, v, m, s, B (or strictly decreasing, orientation being a convention): supports.";
    <https://w3id.org/delphi/ontology/preregistered> "true"^^xsd:boolean .
  
  <https://w3id.org/delphi/resource/claim/morgan1915-08> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/morgan1915-08--claim-test> .
  
  <https://w3id.org/delphi/resource/evidence/morgan1915-08--claim-test--dataset-1> a
      <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "";
    dc:license "CC BY 4.0";
    <http://www.w3.org/2000/01/rdf-schema#label> "Dataset: FlyBase precomputed gene map table FB2026_03 (D. melanogaster Release 6 coordinates)";
    prov:atLocation <https://s3ftp.flybase.org/releases/current/precomputed_files/genes/gene_map_table_fb_2026_03.tsv.gz>,
      <https://s3ftp.flybase.org/releases/current/precomputed_files/synonyms/fb_synonym_fb_2026_03.tsv.gz>;
    prov:wasDerivedFrom <https://flybase.org/downloads/>;
    <https://w3id.org/delphi/ontology/hasChecksum> "sha256:1fc2f20e1fbf82bbec198f268aeff8bfcea3345f7777e2b9ded43a801ddada5c",
      "sha256:e229f1a3be7124fa04fd70e04db4432e9bddcde38408d8840af2caedd002ecce" .
}

sub:provenance {
  <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1> a
      prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (claude-fable-5.1; evolution-after-darwin-tests-1)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/claude-fable-5-1> .
  
  <https://w3id.org/delphi/resource/model/claude-fable-5-1> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "claude-fable-5.1" .
  
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/evolution-after-darwin/morgan1915-08/result.json>;
    prov:wasGeneratedBy sub:test .
  
  sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
  
  sub:test a prov:Activity;
    prov:qualifiedAssociation sub:plan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-fable-5-1> .
}

sub:pubinfo {
  this: dc:created "2026-11-08T16:24:31.868Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/morgan1915-08--claim-test>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Claim test of morgan1915-08: supports, confidence 0.95";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/evolution-after-darwin> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "fHzZeoFxWYPMHxR80SdNgz9OW0kMeryVHXA6UJ72d4drCt70gCOf9aN8Sw47/O5ZYDs7DOIjBstBHSirUcj/Iq1cXSgsv2wfFSDMyuGRElm3JBD06Aa0mdAL4/ng2KEvQvA7vY5sUq/trb5DheZr5+xNEv4+VVSMzOgVnO8A73GiwCLasfy8enARdc4bFSFUcCX4D/VrP8vEphtj/Rw1XnEarTjwu6z1evoX8l1JYkWTlHmmFRTljnF2mGYGeJpzOD3/T6fjoS0z9lasyR8y55xJr/MQsO5q5q+VVHKH+oTGpwMKVacAWggEP1yhM0f94q6n8dMB6IGztLx2LJRQMA==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}