https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA/Head https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA/assertion https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA/provenance https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA/pubinfo https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RApicPByL-4rFuV-hPe3wldkQhRWDBWW6zZrfnNvlABRA/assertion https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test http://purl.org/dc/terms/description analysis.py downloaded the seven source files at commit bced77dd90e6a5c67bf7a557610b19ee995db729 and the figshare docx, recorded byte size and SHA-256, and searched the docx for a numeric table or a numeric file. The archive contains four images and a caption document with zero Word tables. It then attempted to import MultiNEAT, which raised ModuleNotFoundError. No cell-state trajectory was scored. The model was not re-integrated, and the paper's reported percentages were not copied into measured. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/Assessment https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test http://www.w3.org/2000/01/rdf-schema#comment Measured: null percent of cells matching the French flag at developmental step 90 (n = 0, not measured). Interpretation: Simulation-result claim. The abstract sentence is: "Our system showed the evolution of the much more complex setpoints of cell collectives (tissues) that solve a problem in morphospace: the organization of a body-wide positional information axis (the classic French flag problem in developmental biology)." Cells are rewarded for energy homeostasis in proportion to stripe match; they are not given a local target label. ES-HyperNEAT evolves the policy. A passing run shows that this program reaches the flag. It does not show that cells do this. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test http://www.w3.org/2000/01/rdf-schema#label Claim test of levin-2023-goals-01: inconclusive, confidence 0.9 https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test http://www.w3.org/2000/01/rdf-schema#seeAlso https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/levin-papers/levin-2023-goals-01/result.json https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7 https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/admissibleDatasets A numeric cell-state trajectory from the authors' 2D neural cellular automaton, either emitted by their released code at the pinned commit or deposited as a table. A figure image, a sentence in the paper, and a biological planarian count are not admissible. Re-scoring a deposited matrix must be labelled as not a re-integration of the model. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/assessmentType claim-test/0.1.0 https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/dataKind none https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/disconfirmingObservation At step 90, fewer than half the cells match the target. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/evidenceAgainst Scoring the model requires MultiNEAT, Mesa and OpenCV, which are outside the standard tooling for these tests. Importing MultiNEAT failed. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The committed run.py sets nb_gens = 2. The paper states 250 generations and a population of 350. That evolution was not run. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The figshare supplement is three figure images (energy initialization, perturbation size, random initialization) and their captions. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The source files were fetched. They do not contain an evolved genome or a cell-state matrix, so the pre-registered accuracy was not computed. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/evidenceAgainst This record does not show whether the program forms a French flag, and it does not show that cells do this. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/expectedObservation At developmental step 90, at least 90 percent of cells match the French-flag target. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/failCriterion Pre-registered: refutes if accuracy at step 90 is < 50. Mixed if accuracy is >= 50 and < 90. If the authors' code cannot be executed and no numeric cell-state matrix from a run can be fetched, the verdict is inconclusive with reason data-unavailable, and the paper's 95.1 is not copied into measured. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/hasConfidence 0.9 https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-2 https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-3 https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/hasVerdict inconclusive https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/hypothesis A 2D neural cellular automaton whose cells pursue only energy homeostasis, with that reward tied to how well the tissue matches a stripe pattern, and whose policy is evolved by ES-HyperNEAT, reaches a French-flag pattern by developmental step 90. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/inferenceMethod Accuracy = 100 * (cells in the target state) / (number of cells), at step 90, compared with 90 (pass) and 50 (fail). https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/passCriterion Pre-registered before opening the supplementary file and before any developmental run. Pattern accuracy is the percentage of cells whose state equals the French-flag target at that position. Supports if a tissue produced by the authors' ES-HyperNEAT setup, started from the homogeneous initial state and scored at developmental step 90, has accuracy >= 90. The 90 threshold is the paper's own cutoff for the evolutions it treated as having solved the flag. The representative 95.1 percent at step 90 is recorded if recomputed, and is not required. https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/ontology/preregistered false https://w3id.org/delphi/resource/claim/levin-2023-goals-01 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/levin-2023-goals-01--claim-test https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://purl.org/dc/terms/description authors' released model; nb_gens in run.py is 2 and no evolved genome is included. Not executed. The paper states 250 generations and population 350. https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://purl.org/dc/terms/license https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/2000/01/rdf-schema#label Dataset: Pio-Lopez and Levin neural cellular automaton source, ES-HyperNEAT French-flag experiment https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/analysis.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/agents.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/model_for_analysis.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/schedule.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/server.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/multicellularity/visualize.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://raw.githubusercontent.com/LPioL/scalefreecognition/bced77dd90e6a5c67bf7a557610b19ee995db729/run.py https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 http://www.w3.org/ns/prov#wasDerivedFrom https://github.com/LPioL/scalefreecognition https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:0340609bbda69b0a77fb171332d18a24664ca72281437e213850d08d581cc42f https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:80007d10f78613bff14db5eac62443c59369d714f25385ba964bcd5c80662546 https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:bf05e91b35b0400842855cebf108d4036d15236554aa8362eaac25d09bbaa751 https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:ca94cb5e472c94a7b77f10c6e152c5c04d75498b3da29caab15c3c299ebc87bc https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:e9b4b6fc59a884b119a686e521f2f8a31e6e76fa735130ecca4d1022f5e16a3b https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:ebd87f69e0cda6a4939fc1c5e876e5d48cb505f52b213262e1314ba45c535a85 https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:f2889d99911b3e424b794e8bc4369a665b68504f2e7b6264baef9f1b12fc0de1 https://w3id.org/delphi/resource/evidence/levin-2023-goals-01--claim-test--dataset-2 http://purl.org/dc/terms/description checked for a deposited cell-state or stress matrix; 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