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https://w3id.org/np/RAp3Md82DCoKoS5gL_SPt_e1oRdQIsBB1dl3FWxTi5j24

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Content

@prefix np: <http://www.nanopub.org/nschema#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix ns1: <https://w3id.org/np/snakemake/> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix schema: <https://schema.org/> .
@prefix sub: <https://w3id.org/np/RAp3Md82DCoKoS5gL_SPt_e1oRdQIsBB1dl3FWxTi5j24/> .
@prefix this: <https://w3id.org/np/RAp3Md82DCoKoS5gL_SPt_e1oRdQIsBB1dl3FWxTi5j24> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
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    ns1:hasSummary <http://purl.org/nanopub/temp/ws-fee5143f-7f86-4bc8-a1d3-26ff63ed3b6b>;
    ns1:hasWorkflowRun <http://purl.org/nanopub/temp/wr-cb8bbb69-cb5f-4be0-b215-4c35c11f20dd> .
  
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    ns1:parameterValue "-R '@RG\\tID:{sample}\\tSM:{sample}'" .
  
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    ns1:parameterValue "" .
  
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    ns1:parameterValue "" .
  
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    ns1:ruleName "bwa_mem" .
  
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    ns1:ruleName "plot_quals" .
  
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    ns1:hasOutput "sorted_reads/A.bam.bai", "sorted_reads/B.bam.bai", "sorted_reads/{sample}.bam.bai";
    ns1:hasParameterization <http://purl.org/nanopub/temp/param-samtools_index-1>;
    ns1:hasSoftwarePackage "envs/samtools.yml", "v5.7.0/bio/samtools/index";
    ns1:parametersJSON "[\"\"]";
    ns1:ruleName "samtools_index" .
  
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    ns1:configfile "config/config.yaml";
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    ns1:description "";
    ns1:hasRule <http://purl.org/nanopub/temp/rule-all>, <http://purl.org/nanopub/temp/rule-bcftools_call>,
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    ns1:includedSnakefile "/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile";
    ns1:mainSnakefile "/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile";
    ns1:workflowMetadataJSON "{}" .
  
  <http://purl.org/nanopub/temp/ws-fee5143f-7f86-4bc8-a1d3-26ff63ed3b6b> a ns1:WorkflowSummary;
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}

sub:provenance {
  sub:assertion prov:generatedAtTime "2026-03-13T00:39:59.420555"^^xsd:dateTime;
    prov:wasAttributedTo orcid:0000-0003-2408-7588 .
}

sub:pubinfo {
  this: np:hasNanopubType schema:Dataset;
    prov:generatedAtTime "2026-03-13T00:39:59.420555"^^xsd:dateTime;
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  sub:sig npx:hasAlgorithm "RSA";
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    npx:hasSignatureTarget this:;
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}