[ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/provenance", "@graph": [ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-4.json" }, { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0" } ], "http://www.w3.org/ns/prov#wasGeneratedBy": [ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/assessment" } ] }, { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/assessment", "@type": [ "http://www.w3.org/ns/prov#Activity" ], "http://www.w3.org/ns/prov#qualifiedAssociation": [ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/assessmentPlan" } ], "http://www.w3.org/ns/prov#wasAssociatedWith": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium" } ] }, { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/assessmentPlan", "http://www.w3.org/ns/prov#hadPlan": [ { "@id": "https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md" } ] } ] }, { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/assertion", "@graph": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium", "@type": [ "http://www.w3.org/ns/prov#SoftwareAgent" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "delphisci dataset-resolvability assessor (GPT-5.6 Sol)" } ], "http://www.w3.org/ns/prov#actedOnBehalfOf": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "https://w3id.org/delphi/ontology/usesModel": [ { "@id": "https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium" } ] }, { "@id": "https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium", "http://purl.org/dc/terms/identifier": [ { "@value": "gpt-5.6-sol-medium" } ], "@type": [ "https://w3id.org/delphi/ontology/LanguageModel" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "GPT-5.6 Sol" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt", "http://purl.org/dc/terms/description": [ { "@value": "Strain-dependent stiffness maps directly to standard force-extension variables and can be cleanly tested. Published single-molecule measurements plausibly permit a restricted compilation, but there is no identified open dataset with broad, standardized coverage. Existing data can test nonlinearity in selected conditions rather than establish the full sequence-by-strain account." } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#comment": [ { "@value": "Proposed test with existing data: Compile force-extension measurements for single tropocollagen molecules and estimate tangent modulus over successive strain intervals while controlling sequence and loading rate. A strain-independent modulus over the tested deformation range would refute the claim." } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "GPT-5.6 Sol on buehler-2009-tropocollagen-sequencing-03: partially-resolvable, resolvability 0.61" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0" } ], "https://w3id.org/delphi/ontology/evidenceAgainst": [ { "@value": "Available measurements may cover only a limited strain range." }, { "@value": "Loading rate and molecular boundary conditions confound comparisons." }, { "@value": "Single-molecule force-extension records are scattered across papers and supplements." } ], "https://w3id.org/delphi/ontology/hasConfidence": [ { "@value": "0.74", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasEvidence": [ { "@id": "https://w3id.org/delphi/resource/evidence/buehler-2009-tropocollagen-sequencing-03--gpt--dataset-1" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.615", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasVerdict": [ { "@value": "partially-resolvable" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/buehler-2009-tropocollagen-sequencing-03--gpt--dataset-1", "http://purl.org/dc/terms/description": [ { "@value": "sequence and structural context for collagen molecules represented in mechanical studies" } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Candidate dataset: RCSB Protein Data Bank" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://www.rcsb.org/" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--analysis-feasibility", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Analysis feasibility of buehler-2009-tropocollagen-sequencing-03 by GPT-5.6 Sol: 0.62" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/analysis-feasibility" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.62", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--data-adequacy", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Data adequacy of buehler-2009-tropocollagen-sequencing-03 by GPT-5.6 Sol: 0.38" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/data-adequacy" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.38", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--data-existence", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Data existence of buehler-2009-tropocollagen-sequencing-03 by GPT-5.6 Sol: 0.48" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/data-existence" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.48", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--discriminating-power", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Discriminating power of buehler-2009-tropocollagen-sequencing-03 by GPT-5.6 Sol: 0.75" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/discriminating-power" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.75", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--operationalizability", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Operationalizability of buehler-2009-tropocollagen-sequencing-03 by GPT-5.6 Sol: 0.88" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/operationalizability" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.88", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/claim/buehler-2009-tropocollagen-sequencing-03", "https://w3id.org/delphi/ontology/hasAssessment": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--analysis-feasibility" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--data-adequacy" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--data-existence" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--discriminating-power" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt--operationalizability" } ] } ] }, { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/pubinfo", "@graph": [ { "@id": "https://w3id.org/delphi/resource/domain/buehler-protein-materials", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "buehler-protein-materials" } ] }, { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-08T04:48:50.317Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/hasNanopubType": [ { "@id": "https://w3id.org/delphi/ontology/LLMClaimAssessment" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-tropocollagen-sequencing-03--gpt" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "GPT-5.6 Sol on buehler-2009-tropocollagen-sequencing-03: partially-resolvable, resolvability 0.61" } ], "https://w3id.org/delphi/ontology/domain": [ { "@id": "https://w3id.org/delphi/resource/domain/buehler-protein-materials" } ] }, { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "p3wg5Per8CVbDxe80UZKM/Wsabz/ZsLzYe1uVNMHfXbtkZzWyftivls4jc26fQyHwJKj+fhB1JcHhD5U+amICqCOrz/qL7c3GIvw13Y3gcYKDz5IoQ9P14dzBD1VgIkfXbsy1IBBJFDZb6GHaZ7qHnjKyPCRB4VhiyEDKos3b4yeubwwyazpGH0etWjLobXrd78mRyHcaGUiiwKXvCIVqqU/zdPWF64biffjM6PFIsbAYe0v4FvdDRmFo/Bl9cdGBxpPzOILU2F5xL5o2mERgf9fIDSgK2dx8i73fNbIt6i8GLA2j6dxxxNtchVLDCHPmhx9QLqksJtymYF70QnS1w==" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ] } ] }, { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/Head", "@graph": [ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RAoFJSr4u-HFXAcpLbhoKzUS94xQYMYvg3x7QlVhUtS98/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] } ]