[ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/pubinfo", "@graph": [ { "@id": "https://w3id.org/delphi/resource/domain/buehler-protein-materials", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "buehler-protein-materials" } ] }, { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-08T04:48:50.317Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/hasNanopubType": [ { "@id": "https://w3id.org/delphi/ontology/LLMClaimAssessment" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Gemini 4 Argon on buehler-2009-helical-networks-04: resolvable-now, resolvability 0.83" } ], "https://w3id.org/delphi/ontology/domain": [ { "@id": "https://w3id.org/delphi/resource/domain/buehler-protein-materials" } ] }, { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "JHFjYZWsejIccKM413BrsL7B1uzNbKpwT9SVQthGX8rmyZvF63HeCn0b6N+Uym60+cmVOtzgfzU8tcXHlvFH3EaGptY+1Zl9R/BWa/vtm6j5PSqFZ9FpifkKa0FBVHOQMbry5ix+KNOPj2ooG0zVvtOxFKN+7yIDNeoiUIzIxmHaoSzmlGbDIsjOSO9Z8dNDKQmePkGriYA4IU1MKqvv3lctdz4ohFArfMgQuRNzG4muLqcgYLAZIpWIJSX3THGVCgqnIrkc9HP6AjBD9XLUIpk3VsRDYTvE1X4lPQDGtRWo3EF5PRH/Lyj0PyTnGnYOyex0rQkO+Nk/9eWYtnGPxQ==" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ] } ] }, { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/Head", "@graph": [ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] }, { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/assertion", "@graph": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium", "@type": [ "http://www.w3.org/ns/prov#SoftwareAgent" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "delphisci dataset-resolvability assessor (Gemini 4 Argon)" } ], "http://www.w3.org/ns/prov#actedOnBehalfOf": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "https://w3id.org/delphi/ontology/usesModel": [ { "@id": "https://w3id.org/delphi/resource/model/gemini-4-argon-medium" } ] }, { "@id": "https://w3id.org/delphi/resource/model/gemini-4-argon-medium", "http://purl.org/dc/terms/identifier": [ { "@value": "gemini-4-argon-medium" } ], "@type": [ "https://w3id.org/delphi/ontology/LanguageModel" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Gemini 4 Argon" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini", "http://purl.org/dc/terms/description": [ { "@value": "Scoped to the mesoscale network model, the relative sensitivities of peak stress and failure strain to crack length and the specific 57% strength retention at 80% crack width are directly testable by re-running the open-access model in LAMMPS. The system size is tiny and all potential parameters and boundary conditions are published in the text. Aside from checking both stress definitions described in the Methods section, no new data collection or model research is required." } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#comment": [ { "@value": "Proposed test with existing data: From the LAMMPS simulations of the 20-by-24 bead network across relative crack sizes from 0% to 80%, record peak virial stress and failure strain as functions of relative crack size, and compute the ratio of maximum stress at 80% crack width to that of the defect-free network. The claim is confirmed if maximum stress decays faster with crack size than failure strain does and the 80%-cracked network retains approximately 57% of the flawless strength." } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Gemini 4 Argon on buehler-2009-helical-networks-04: resolvable-now, resolvability 0.83" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0" } ], "https://w3id.org/delphi/ontology/evidenceAgainst": [ { "@value": "The Methods section notes two stress definitions (domain-averaged virial stress versus remotely applied stress inferred from the flawless stress-strain curve), which must be kept distinct when checking the 57% ratio." } ], "https://w3id.org/delphi/ontology/hasConfidence": [ { "@value": "0.85", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasEvidence": [ { "@id": "https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-04--gemini--dataset-1" }, { "@id": "https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-04--gemini--dataset-2" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.828", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasVerdict": [ { "@value": "resolvable-now" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-04--gemini--dataset-1", "http://purl.org/dc/terms/description": [ { "@value": "open-access specification of the mesoscale bead model, crack construction, and virial versus remote stress definitions" } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Candidate dataset: Ackbarow et al. 2009 PLoS ONE Full Text and Parameter Table" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://doi.org/10.1371/journal.pone.0006015" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-04--gemini--dataset-2", "http://purl.org/dc/terms/description": [ { "@value": "open-source molecular dynamics package for computing virial stress-strain curves across crack sizes" } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Candidate dataset: LAMMPS Molecular Dynamics Simulator" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://www.lammps.org/" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--analysis-feasibility", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Analysis feasibility of buehler-2009-helical-networks-04 by Gemini 4 Argon: 0.85" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/analysis-feasibility" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.85", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--data-adequacy", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Data adequacy of buehler-2009-helical-networks-04 by Gemini 4 Argon: 0.75" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/data-adequacy" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.75", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--data-existence", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Data existence of buehler-2009-helical-networks-04 by Gemini 4 Argon: 0.8" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/data-existence" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.8", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--discriminating-power", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Discriminating power of buehler-2009-helical-networks-04 by Gemini 4 Argon: 0.85" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/discriminating-power" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.85", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--operationalizability", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini" } ], "http://purl.org/dc/terms/subject": [ { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability" } ], "@type": [ "https://w3id.org/delphi/ontology/LLMClaimAssessment" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Operationalizability of buehler-2009-helical-networks-04 by Gemini 4 Argon: 0.9" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium" } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "dataset-resolvability/0.2.0/operationalizability" } ], "https://w3id.org/delphi/ontology/hasScore": [ { "@value": "0.9", "@type": "http://www.w3.org/2001/XMLSchema#double" } ] }, { "@id": "https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-04", "https://w3id.org/delphi/ontology/hasAssessment": [ { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--analysis-feasibility" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--data-adequacy" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--data-existence" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--discriminating-power" }, { "@id": "https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-04--gemini--operationalizability" } ] } ] }, { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/provenance", "@graph": [ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-2.json" }, { "@id": "https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0" } ], "http://www.w3.org/ns/prov#wasGeneratedBy": [ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/assessment" } ] }, { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/assessment", "@type": [ "http://www.w3.org/ns/prov#Activity" ], "http://www.w3.org/ns/prov#qualifiedAssociation": [ { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/assessmentPlan" } ], "http://www.w3.org/ns/prov#wasAssociatedWith": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium" } ] }, { "@id": "https://w3id.org/np/RAlroJyoezlAFsOlnrE-1xgApW09BufE342OrOggEeMIk/assessmentPlan", "http://www.w3.org/ns/prov#hadPlan": [ { "@id": "https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md" } ] } ] } ]