@prefix this: <https://w3id.org/np/RAkyD25GVClE2dSV92SROh6gOVymZ7oV37yMCvhMUucek> .
@prefix sub: <https://w3id.org/np/RAkyD25GVClE2dSV92SROh6gOVymZ7oV37yMCvhMUucek/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/assessment/aristotle-ga02-21--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
    dc:description "analysis.py joins FishBase species, reproduc, and maturity on SpecCode and keeps genus Anguilla. A ReproMode value beginning with 'dioec' is the table's dioecism code and is read as the pre-registered separate-sex code. 18 Anguilla species have that code. 5 species have both male and female rows in the maturity table. BioSample hits count only when a sex attribute equals male or female. Validated males 19 of raw 117; validated females 18 of raw 186. Mugil cephalus is reported and does not set the verdict.";
    <http://www.w3.org/2000/01/rdf-schema#comment> "Measured: 18 Anguilla species whose FishBase ReproMode starts with dioec (n = 19, species count in FishBase 24.07; one reproduction row per listed species). Interpretation: Aristotle's eels are the genus Anguilla. 'Neither male nor female' means no differentiated sexes, not sequential hermaphroditism and not a failure to notice small gonads. A dioecious or gonochoristic code, or deposited male and female specimens, refutes that reading. The mullet of stagnant waters is unnamed; it is not hunted for after the data are open. Mugil cephalus is reported only because it was named here, before the download, as the common Mediterranean mullet.";
    <http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ga02-21: refutes, confidence 0.93";
    <http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga02-21/result.json>;
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
    <https://w3id.org/delphi/ontology/admissibleDatasets> "FishBase 24.07 reproduc.parquet, maturity.parquet, and species.parquet from the Source Cooperative snapshot, plus NCBI BioSample for organism Anguilla with a sex attribute. The verdict follows Anguilla only.";
    <https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
    <https://w3id.org/delphi/ontology/dataKind> "biological";
    <https://w3id.org/delphi/ontology/disconfirmingObservation> "An Anguilla species is coded as having males and females, or at least five biosamples of each sex exist.";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Eel gonads are small until the fish matures, which is why an ancient observer could miss them. The test asks whether males and females exist, not whether they are obvious in a market fish.",
      "FishBase is CC BY-NC and is not redistributed here.", "The unnamed mullet of stagnant waters is not identified. Mugil cephalus is a pre-specified side note.";
    <https://w3id.org/delphi/ontology/expectedObservation> "Anguilla reproduction codes say the fish has no sex, and biosamples are not labelled male or female.";
    <https://w3id.org/delphi/ontology/failCriterion> "Refutes if any Anguilla species is coded dioecious, gonochoristic, or separate sexes, or has a sex ratio that names both males and females, OR validated biosamples include at least 5 males and at least 5 females. Mixed if one source says separate sexes and the other says no sexes. Inconclusive, reason data-unavailable, if there is no Anguilla reproduction row and the biosample queries return no validated sex. The stagnant-water mullet is not identified in the claim. Mugil cephalus is reported as a pre-specified secondary example and does not change the eel verdict.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.93"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-ga02-21--claim-test--dataset-1>,
      <https://w3id.org/delphi/resource/evidence/aristotle-ga02-21--claim-test--dataset-2>,
      <https://w3id.org/delphi/resource/evidence/aristotle-ga02-21--claim-test--dataset-3>,
      <https://w3id.org/delphi/resource/evidence/aristotle-ga02-21--claim-test--dataset-4>;
    <https://w3id.org/delphi/ontology/hasVerdict> "refutes";
    <https://w3id.org/delphi/ontology/hypothesis> "If eels are neither male nor female, then FishBase will not code any Anguilla species as having separate sexes, and NCBI BioSample will not contain both male and female Anguilla samples.";
    <https://w3id.org/delphi/ontology/inferenceMethod> "Join reproduction and maturity rows to species on SpecCode, keep genus Anguilla, and read columns whose names contain repro, hermaphrod, sexual, sex, or gonad. Biosample queries: Anguilla[ORGN] AND male[ATTR], and the same with female. A biosample counts only if the summary text marks sex as male or female. Threshold five of each sex, or any explicit separate-sex code.";
    <https://w3id.org/delphi/ontology/passCriterion> "Supports if every Anguilla species that has a reproduction record is coded as having no differentiated sex (wording such as undifferentiated, no sexes, or neither male nor female) AND validated male biosamples and validated female biosamples are both zero.";
    <https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
  
  <https://w3id.org/delphi/resource/claim/aristotle-ga02-21> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/aristotle-ga02-21--claim-test> .
  
  <https://w3id.org/delphi/resource/evidence/aristotle-ga02-21--claim-test--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "reproduc.parquet";
    dc:license "CC BY-NC 3.0";
    <http://www.w3.org/2000/01/rdf-schema#label> "Dataset: FishBase 24.07 reproduc.parquet";
    prov:atLocation <https://s3.us-west-2.amazonaws.com/us-west-2.opendata.source.coop/cboettig/fishbase/fb/v24.07/parquet/reproduc.parquet>;
    prov:wasDerivedFrom <https://source.coop/cboettig/fishbase/fb/v24.07>;
    <https://w3id.org/delphi/ontology/hasChecksum> "sha256:24c208a224357c36f3e4a5b6e34357837671f0c5a0b3954c2fe698d26909155b" .
  
  <https://w3id.org/delphi/resource/evidence/aristotle-ga02-21--claim-test--dataset-2>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "species.parquet";
    dc:license "CC BY-NC 3.0";
    <http://www.w3.org/2000/01/rdf-schema#label> "Dataset: FishBase 24.07 species.parquet";
    prov:atLocation <https://s3.us-west-2.amazonaws.com/us-west-2.opendata.source.coop/cboettig/fishbase/fb/v24.07/parquet/species.parquet>;
    prov:wasDerivedFrom <https://source.coop/cboettig/fishbase/fb/v24.07>;
    <https://w3id.org/delphi/ontology/hasChecksum> "sha256:571c60b0b47cf50ca28d49b01b6abc17ab0506d8233e7d703b2c87e3ff41fb3c" .
  
  <https://w3id.org/delphi/resource/evidence/aristotle-ga02-21--claim-test--dataset-3>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "maturity.parquet";
    dc:license "CC BY-NC 3.0";
    <http://www.w3.org/2000/01/rdf-schema#label> "Dataset: FishBase 24.07 maturity.parquet";
    prov:atLocation <https://s3.us-west-2.amazonaws.com/us-west-2.opendata.source.coop/cboettig/fishbase/fb/v24.07/parquet/maturity.parquet>;
    prov:wasDerivedFrom <https://source.coop/cboettig/fishbase/fb/v24.07>;
    <https://w3id.org/delphi/ontology/hasChecksum> "sha256:06ea0393dc5671542997f31ccc3d7d56c90837b676686fcef4bcfee6b6e14d29" .
  
  <https://w3id.org/delphi/resource/evidence/aristotle-ga02-21--claim-test--dataset-4>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "sexed eel samples";
    dc:license "NCBI public access";
    <http://www.w3.org/2000/01/rdf-schema#label> "Dataset: NCBI BioSample Anguilla records whose sex attribute is male or female";
    prov:atLocation <https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=biosample&term=Anguilla%5BOrganism%5D%20AND%20female%5BAll%20Fields%5D&retmode=json&retmax=20>,
      <https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=biosample&term=Anguilla%5BOrganism%5D%20AND%20male%5BAll%20Fields%5D&retmode=json&retmax=20>;
    prov:wasDerivedFrom <https://www.ncbi.nlm.nih.gov/biosample/>;
    <https://w3id.org/delphi/ontology/hasChecksum> "sha256:9de122f67be9d5b9736d13594c247f7e034297b554689236a42234a2f5565fc3",
      "sha256:dc60f207b3c7adc21c6e0e571e88c42e1d8ec0c89e72af29775f83c5c5f04950" .
}

sub:provenance {
  <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (Grok 4.7; cursor/aristotle-biology-claims-c60f)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
  
  <https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "Grok 4.7" .
  
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga02-21/result.json>;
    prov:wasGeneratedBy sub:test .
  
  sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
  
  sub:test a prov:Activity;
    prov:qualifiedAssociation sub:plan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}

sub:pubinfo {
  this: dc:created "2026-11-08T16:24:31.735Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-ga02-21--claim-test>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ga02-21: refutes, confidence 0.93";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "F6XQQionc8LB3GMhSUYNUg1O8rfdz8VjMbL2KYDvUPAgyrU0XsQjgpdzjnFnWS71MY7xryo35ecRKmv0PLnVrGwYBJyte2Tv0IufpDG3Qxo7axud5FcgTfLWuFTKPbwuOV5MTZb0uSdSDe57J0fIAkrF4YdmEPFFuQyijVR7Hl3LegstpKgYPMiPz2EvaZS0OX4tNTjvonuQI+G4eDqSScYmAoZZ2t5XwW9HdlX8J54+DUK+r+t56wg6qKo9FqJ074MaF2/BNdZ2wXQCzDSmMdtJ3+kZhnWz7853imAVuEMkphAHCCybBW8NB9paTvNCY8PvBYHH7MlCNo14uABgjg==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}