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https://w3id.org/np/RAk6LwjLqb3BMPvn6Z4XDeL4oO2nqDEu4_uMt0NojFWM4

Formats

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Content

@prefix this: <https://w3id.org/np/RAk6LwjLqb3BMPvn6Z4XDeL4oO2nqDEu4_uMt0NojFWM4> .
@prefix sub: <https://w3id.org/np/RAk6LwjLqb3BMPvn6Z4XDeL4oO2nqDEu4_uMt0NojFWM4/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>
    a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci dataset-resolvability assessor (GPT-5.6 Sol)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt> a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "The observed bond count is straightforward to quantify at scale with public structures. The stronger optimality assertion needs matched mechanical and thermodynamic outcomes over alternative architectures, which structural databases do not provide, so existing data can resolve only the geometrical agreement and restricted correlational evidence.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Measure hydrogen bonds per helical turn in experimental alpha-helical structures and, where matched mechanical and thermodynamic measurements exist, compare stability across architectures with differing bond counts. The claim is supported only if the joint mechanical-and-thermodynamic optimum lies at three to four bonds per turn; prevalence near 3.6 alone tests geometry but not optimality.";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol on buehler-2007-hierarchies-04: partially-resolvable, resolvability 0.59";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Matched strength and free-energy measurements are not encoded in structural records.",
      "Natural alpha-helices have limited variation in backbone hydrogen-bond topology.",
      "Structural prevalence does not establish a mechanical or thermodynamic optimum.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.72"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/buehler-2007-hierarchies-04--gpt--dataset-1>;
    <https://w3id.org/delphi/ontology/hasScore> "0.594"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "partially-resolvable" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Analysis feasibility of buehler-2007-hierarchies-04 by GPT-5.6 Sol: 0.78";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/analysis-feasibility";
    <https://w3id.org/delphi/ontology/hasScore> "0.78"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--data-adequacy>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2007-hierarchies-04 by GPT-5.6 Sol: 0.48";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-adequacy";
    <https://w3id.org/delphi/ontology/hasScore> "0.48"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data existence of buehler-2007-hierarchies-04 by GPT-5.6 Sol: 0.66";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-existence";
    <https://w3id.org/delphi/ontology/hasScore> "0.66"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2007-hierarchies-04 by GPT-5.6 Sol: 0.43";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.43"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2007-hierarchies-04 by GPT-5.6 Sol: 0.65";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
    <https://w3id.org/delphi/ontology/hasScore> "0.65"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2007-hierarchies-04> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt>, <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--analysis-feasibility>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--data-adequacy>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2007-hierarchies-04--gpt--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "experimental alpha-helical structures for hydrogen-bond geometry and turns";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
    prov:wasDerivedFrom <https://www.rcsb.org/> .
  
  <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gpt-5.6-sol-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-1.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2007-hierarchies-04--gpt>;
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol on buehler-2007-hierarchies-04: partially-resolvable, resolvability 0.59";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "innNiOgmnI3zAQNVh1oxhf0dO5fvrCHYFDazIwfP7RyTpUx7ldbFL7oEFvsE2fbWXjrGgMjU0DpUz/LEwDtSoVKH+NXuYZpqZPXcwkCHKMJFSA0Yj6VGnS709zbubJV00NQX2YKnr727T7PSc5bqkH0XJv3xH1FxPtF2AVemKnheM5WaWdb8UlablFy3t+2XX/36CDO8z0hV+2/z6JEkaMDjhtvMZERD6gcRves+fmEE6e5RQthGD2jnDGCH6/vuf92dPL7OBTsXoo5AwvaFMHdFvLJDsrzxaGL9e7fvjwyNCUp5nYcwZIbwYS6x+VpmSQc2jO5VHYxdMGmbaqwadA==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}