[ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/pubinfo", "@graph": [ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-08T16:24:31.734Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/hasNanopubType": [ { "@id": "https://w3id.org/delphi/ontology/Assessment" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/delphi/resource/assessment/aristotle-ga02-16--claim-test--pr-116" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Claim test of aristotle-ga02-16 (pr-116): supports, confidence 0.8" } ], "https://w3id.org/delphi/ontology/domain": [ { "@id": "https://w3id.org/delphi/resource/domain/aristotle-biology" } ] }, { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "E2oysQd6J4qgeaXtnFmR8zsPaUdcOiPZKnHeewHm7AWRPKyQbIiLDjXPUL7POjlHvCHEPX00spHc2C2bdEVHYew4H+XcSf3H1JJyIenlVREfYhWE3rG9JUeUlGNWJYjmyV8aZcx7Ee5Lkq1OUcZCjnxiSEsVdgmbSz1KLXylVo605cy6ldmhUJJC0r2d5bxFq430/loqp0a6iaA8dZK21VVRIaRLZh24YaNWLRdFj9rElFM5OCqXmIAXMNYRyZEonG6i/CVHMqGAiMicbQlMq+d/sKlLgx0NiFYv8L3CE2BQtBBblTDUNk82IwOwtwejAy4T+hYY+D8EzuDZwFJ+8w==" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ] } ] }, { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/assertion", "@graph": [ { "@id": "https://w3id.org/delphi/resource/assessment/aristotle-ga02-16--claim-test--pr-116", "http://purl.org/dc/terms/description": [ { "@value": "Downloaded shark_modepruned_E.csv and shark_modepruned_D.csv from the public Dryad file_stream URLs for the file ids in the version file list (the API download route requires a bearer token), checked each SHA-256 against the publisher digest, and counted unique species whose mode normalizes to placental_viviparity. The five-mode vocabulary is the one named on the Dryad file description. The verdict uses the pre-registered thresholds: at least 5 in both files supports; zero in E inside that vocabulary refutes; 1 to 4, or E passing while D is zero, is mixed." } ], "@type": [ "https://w3id.org/delphi/ontology/Assessment" ], "http://www.w3.org/2000/01/rdf-schema#comment": [ { "@value": "Measured: 79 species coded placental_viviparity in shark_modepruned_E.csv (n = 957). Interpretation: Aristotle's 'connection with the uterus' so that 'the egg is not set free' is mapped to the dataset category placental viviparity, which the Dryad file description defines as one of five modes alongside yolk-only viviparity and egg-laying. The timing clause 'once the nutriment of the egg is consumed' is not a separate column; it is accepted only as part of that published category, and the caveat is recorded if the count meets the criterion. Cartilaginous fishes are the elasmobranchs (sharks and rays) in the table, which is the claim's scope." } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Claim test of aristotle-ga02-16 (pr-116): supports, confidence 0.8" } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga02-16/pr-116/result.json" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "https://w3id.org/delphi/ontology/admissibleDatasets": [ { "@value": "An openly licensed species-level compilation of elasmobranch reproductive mode, independent of Aristotle's text, that distinguishes placental viviparity from yolk-only live-bearing and from egg-laying. A parity-only coding (live-bearing versus egg-laying) does not count." } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "claim-test/0.1.0" } ], "https://w3id.org/delphi/ontology/dataKind": [ { "@value": "biological" } ], "https://w3id.org/delphi/ontology/disconfirmingObservation": [ { "@value": "The corrected table applies the five reproductive-mode categories, including a placental category, and no species is coded placental." } ], "https://w3id.org/delphi/ontology/evidenceAgainst": [ { "@value": "A placental label does not by itself record the week on which the yolk is exhausted." }, { "@value": "No reproductive-mode values were read before this registration. The Dryad landing-page file list and column description were used to name the files and the mode vocabulary." } ], "https://w3id.org/delphi/ontology/expectedObservation": [ { "@value": "At least five species of cartilaginous fishes are coded as placental viviparity in the corrected species table, and the original coding agrees." } ], "https://w3id.org/delphi/ontology/failCriterion": [ { "@value": "Pre-registered. The claim is refuted if shark_modepruned_E.csv uses the five-mode vocabulary named on the Dryad landing page (egg-laying, live-bearing with oophagy, live-bearing with uterine milk, placental viviparity, yolk-only viviparity) and the placental_viviparity count is 0 among at least 30 coded species. The verdict is mixed if the E count is 1 to 4, or if E is at least 5 while D is 0. If E is missing, the mode column is absent, or the value vocabulary matches neither the five-mode list nor a zero placental count inside that list, the verdict is inconclusive with reason data-unavailable or not-operationalizable as specified in the test contract." } ], "https://w3id.org/delphi/ontology/hasConfidence": [ { "@value": "0.8", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasEvidence": [ { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ga02-16--claim-test--pr-116--dataset-1" } ], "https://w3id.org/delphi/ontology/hasVerdict": [ { "@value": "supports" } ], "https://w3id.org/delphi/ontology/hypothesis": [ { "@value": "If some cartilaginous fishes finish development while attached to the mother, so that the egg is not released, a species-level table of shark and ray reproductive modes will code more than a handful of species as placental viviparity." } ], "https://w3id.org/delphi/ontology/inferenceMethod": [ { "@value": "Count unique species in shark_modepruned_E.csv with mode placental_viviparity. Support requires that count and the same count in shark_modepruned_D.csv to be at least 5. Zero in E, inside the five-mode vocabulary and with at least 30 coded species, refutes. A count of 1 to 4, or disagreement in which E passes and D is zero, is mixed." } ], "https://w3id.org/delphi/ontology/passCriterion": [ { "@value": "Pre-registered. In shark_modepruned_E.csv (the corrected five-mode coding), the number of unique non-empty species whose mode normalizes to placental_viviparity is at least 5, and the same count in shark_modepruned_D.csv is also at least 5. Mode strings are compared after lowercasing and replacing spaces and hyphens with underscores." } ], "https://w3id.org/delphi/ontology/preregistered": [ { "@value": "false", "@type": "http://www.w3.org/2001/XMLSchema#boolean" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ga02-16--claim-test--pr-116--dataset-1", "http://purl.org/dc/terms/description": [ { "@value": "species-level reproductive mode of sharks and rays, corrected (E) and original (D) codings" } ], "http://purl.org/dc/terms/license": [ { "@value": "CC0-1.0" } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Dataset: Data and R Script from: The ancestor of sharks and rays laid eggs, but ancestral state reconstructions need empirically supported traits and transparent reporting" } ], "http://www.w3.org/ns/prov#atLocation": [ { "@id": "https://datadryad.org/downloads/file_stream/3901770" }, { "@id": "https://datadryad.org/downloads/file_stream/3901773" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://datadryad.org/dataset/doi:10.5061/dryad.80gb5mm12" } ], "https://w3id.org/delphi/ontology/hasChecksum": [ { "@value": "sha256:bb32d5be6070379d3e44db08d58eb1d6f30a64a4ed7a7b89c4afe26b65d8a872" }, { "@value": "sha256:ea9d1b989bee8941eb0e9f89cb6457f22bd5e13b3d5b5777066a18eee709923d" } ] }, { "@id": "https://w3id.org/delphi/resource/claim/aristotle-ga02-16", "https://w3id.org/delphi/ontology/hasAssessment": [ { "@id": "https://w3id.org/delphi/resource/assessment/aristotle-ga02-16--claim-test--pr-116" } ] } ] }, { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/Head", "@graph": [ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] }, { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/provenance", "@graph": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7", "@type": [ "http://www.w3.org/ns/prov#SoftwareAgent" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "delphisci claim tester (Grok 4.7; cursor/aristotle-biology-tests-f1f3)" } ], "http://www.w3.org/ns/prov#actedOnBehalfOf": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "https://w3id.org/delphi/ontology/usesModel": [ { "@id": "https://w3id.org/delphi/resource/model/grok-4-7" } ] }, { "@id": "https://w3id.org/delphi/resource/model/grok-4-7", "http://purl.org/dc/terms/identifier": [ { "@value": "Grok 4.7" } ], "@type": [ "https://w3id.org/delphi/ontology/LanguageModel" ] }, { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga02-16/pr-116/result.json" } ], "http://www.w3.org/ns/prov#wasGeneratedBy": [ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/test" } ] }, { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/test", "@type": [ "http://www.w3.org/ns/prov#Activity" ], "http://www.w3.org/ns/prov#qualifiedAssociation": [ { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/plan" } ], "http://www.w3.org/ns/prov#wasAssociatedWith": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ] }, { "@id": "https://w3id.org/np/RAjQuWTw_9E5Di892XvgjK0XAosaevqPr2cErwvVmxcuc/plan", "http://www.w3.org/ns/prov#hadPlan": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md" } ] } ] } ]