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Source trees returned by find_trees for those ott ids were downloaded as newick (40 study-tree pairs). A tree is admissible when at least four of the five categories (caballus, asinus, hemionus, quagga, zebra/grevyi) are present (10 trees). The selected tree is pg_1889 tree3841, chosen by category count, then tip count, then study id. Monophyletic=True; outsiders=[]. The share of admissible trees that are monophyletic is 0.9. The stripe clauses were not scored: File names do not show horse, ass or hemionus codes. 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quad { s_iri { prefix_id: 10 name_id: 31 } p_iri { prefix_id: 11 name_id: 13 } o_literal { lex: "checked only for whether non-zebra equids are coded" } } } rows { quad { p_iri { name_id: 39 } o_literal { } } } rows { prefix { id: 5 value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { quad { p_iri { prefix_id: 5 name_id: 10 } o_iri { prefix_id: 4 name_id: 40 } } } rows { prefix { id: 16 value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { quad { p_iri { prefix_id: 16 name_id: 16 } o_literal { lex: "Dataset: Zebra phenotype table looked up and not used for the verdict" } } } rows { prefix { id: 6 value: "https://zenodo.org/api/records?q=doi%3A10.5061/" } } rows { name { value: "dryad.s13rt&size=3" } } rows { quad { p_iri { prefix_id: 14 name_id: 41 } o_iri { prefix_id: 6 name_id: 75 } } } rows { prefix { id: 8 value: "https://datadryad.org/dataset/doi:10.5061/" } } rows { name { value: "dryad.s13rt" } } rows { quad { p_iri { prefix_id: 14 name_id: 73 } o_iri { prefix_id: 8 name_id: 76 } } } rows { quad { p_iri { prefix_id: 4 name_id: 74 } o_literal { lex: "sha256:4dce56a482088fa48b4cb10e2deaa363e197f211d3f6e9635a6842429a5167cb" } } } rows { prefix { id: 1 value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "SoftwareAgent" } } rows { prefix { id: 3 value: "https://w3id.org/np/RAgn4HknuVQNUorsA0U5vFeCm13reSWtuxCOPIStTXWCU/" } } rows { quad { s_iri { prefix_id: 1 name_id: 20 } p_iri { prefix_id: 5 name_id: 10 } o_iri { prefix_id: 14 name_id: 77 } g_iri { prefix_id: 3 name_id: 7 } } } rows { quad { p_iri { prefix_id: 16 name_id: 16 } o_literal { lex: "delphisci claim tester (grok-4.7; cursor/darwin-geology-claims-5fad)" } } } rows { name { value: "actedOnBehalfOf" } } rows { prefix { id: 2 value: "https://orcid.org/" } } rows { name { value: "0009-0007-4948-9192" } } rows { quad { p_iri { prefix_id: 14 name_id: 78 } o_iri { prefix_id: 2 } } } rows { name { value: "usesModel" } } rows { prefix { id: 12 value: "https://w3id.org/delphi/resource/model/" } } rows { name { value: "grok-4-7" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 12 } } } rows { name { value: "identifier" } } rows { quad { s_iri { name_id: 81 } p_iri { prefix_id: 11 } o_literal { lex: "grok-4.7" } } } rows { name { value: "LanguageModel" } } rows { quad { p_iri { prefix_id: 5 name_id: 10 } o_iri { prefix_id: 4 name_id: 83 } } } rows { quad { s_iri { prefix_id: 3 name_id: 4 } p_iri { prefix_id: 14 name_id: 19 } o_iri { prefix_id: 1 } } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/darwin-origin/darwin1859-ch05-16/" } } rows { quad { p_iri { prefix_id: 14 name_id: 73 } o_iri { prefix_id: 13 name_id: 18 } } } rows { name { value: "wasGeneratedBy" } } rows { name { value: "test" } } rows { quad { p_iri { prefix_id: 14 name_id: 84 } o_iri { prefix_id: 3 } } } rows { name { value: "plan" } } rows { name { value: "hadPlan" } } rows { prefix { id: 15 value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/" } } rows { name { value: "README.md" } } rows { quad { s_iri { } p_iri { prefix_id: 14 } o_iri { prefix_id: 15 } } } rows { name { value: "Activity" } } rows { quad { s_iri { prefix_id: 3 name_id: 85 } p_iri { prefix_id: 5 name_id: 10 } o_iri { prefix_id: 14 name_id: 89 } } } rows { name { value: "qualifiedAssociation" } } rows { quad { p_iri { } o_iri { prefix_id: 3 name_id: 86 } } } rows { name { value: "wasAssociatedWith" } } rows { quad { p_iri { prefix_id: 14 name_id: 91 } o_iri { prefix_id: 1 name_id: 20 } } } rows { prefix { id: 9 value: "https://w3id.org/np/" } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 9 name_id: 1 } p_iri { prefix_id: 11 name_id: 92 } o_literal { lex: "2026-11-08T16:24:31.811Z" datatype: 3 } g_iri { prefix_id: 3 name_id: 9 } } } rows { name { value: "creator" } } rows { quad { p_iri { prefix_id: 11 name_id: 93 } o_iri { prefix_id: 2 name_id: 79 } } } rows { prefix { id: 7 value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 11 name_id: 39 } o_iri { prefix_id: 7 name_id: 2 } } } rows { prefix { id: 10 value: "http://purl.org/nanopub/x/" } } rows { name { value: "hasNanopubType" } } rows { quad { p_iri { prefix_id: 10 name_id: 94 } o_iri { prefix_id: 4 name_id: 14 } } } rows { name { value: "introduces" } } rows { prefix { id: 6 value: "https://w3id.org/delphi/resource/assessment/" } } rows { quad { p_iri { prefix_id: 10 name_id: 95 } o_iri { prefix_id: 6 name_id: 12 } } } rows { quad { p_iri { prefix_id: 16 name_id: 16 } o_literal { lex: "Claim test of darwin1859-ch05-16: supports, confidence 0.7" } } } rows { name { value: "domain" } } rows { prefix { id: 8 value: "https://w3id.org/delphi/resource/domain/" } } rows { name { value: "darwin-origin-1859" } } rows { quad { p_iri { prefix_id: 4 name_id: 96 } o_iri { prefix_id: 8 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 3 } p_iri { prefix_id: 10 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "OMUTJfbZBg3Fy4yZdFyQmyvib3feCbwDkUyY06y0gq/yuCh5tWIElp0EomD5ljOSlTH1uoBS/zzJ4He/KKgK2xgKUeZ6MDgMCq4W7kisJ0I50SxQ2mdX1E0HsKurUIqrU3O6hhzaP1oRVV+A7aSUkHttPa0/+Go7JVhr6bEpprdnEt7Hj8sVY/UPWpkmtesWsXhIqMkfhnfsLEaTCWdMb78LgsgGuf294WOdXjo3oo9Xe1c7pps+dR8ynK4yUuVOMAcu2WX1y/TWJMXcR/JbtNjyEqNfUuYF4FkX3L0idp/3BOG3ul22b13/pCrHwmUIMVwWPcQArhjio19ADTd7nA==" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 9 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 10 name_id: 103 } o_iri { prefix_id: 2 name_id: 79 } } }