https://w3id.org/np/RAgiuuVX246NEbUGKsKMWwh2zvX-i9mLedOzH2PlYwm6o
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAgiuuVX246NEbUGKsKMWwh2zvX-i9mLedOzH2PlYwm6o> .
@prefix sub: <https://w3id.org/np/RAgiuuVX246NEbUGKsKMWwh2zvX-i9mLedOzH2PlYwm6o/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>
a prov:SoftwareAgent;
<http://www.w3.org/2000/01/rdf-schema#label> "delphisci dataset-resolvability assessor (Gemini 4 Argon)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> .
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini>
a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
dc:description "Testing whether the empirical distribution of beta-strand lengths across proteomes peaks near the critical shear-strength length scale is a fast, high-powered bioinformatics analysis using the PDB and AlphaFold DB. While evolutionary causation is confounded by globular folding geometry, the stated claim is a correlation between strand-length prevalence and the shear-strength optimum, which is directly and decisively testable with open structural databases.";
dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
<http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Run DSSP across non-redundant experimentally determined structures in the RCSB PDB (or AlphaFold DB proteomes) to compute the histogram of beta-strand lengths (in residues and H-bonds), and test whether the mode of the empirical distribution aligns with the predicted shear-strength optimum (around 3–4 H-bonds, i.e., 4–8 residues).";
<http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2008-hbond-confinement-04: resolvable-now, resolvability 0.88";
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
<https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
<https://w3id.org/delphi/ontology/evidenceAgainst> "Observing a peak in beta-strand length around 4–7 residues confirms the correlation, but non-mechanical factors (globular domain diameter, folding kinetics, hydrophobic core packing) can produce the same length distribution even in proteins that never bear mechanical shear.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.9"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/buehler-2008-hbond-confinement-04--gemini--dataset-1>;
<https://w3id.org/delphi/ontology/hasScore> "0.88"^^xsd:double;
<https://w3id.org/delphi/ontology/hasVerdict> "resolvable-now" .
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--analysis-feasibility>
a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini>;
dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
<http://www.w3.org/2000/01/rdf-schema#label> "Analysis feasibility of buehler-2008-hbond-confinement-04 by Gemini 4 Argon: 0.95";
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
<https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/analysis-feasibility";
<https://w3id.org/delphi/ontology/hasScore> "0.95"^^xsd:double .
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--data-adequacy>
a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini>;
dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
<http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2008-hbond-confinement-04 by Gemini 4 Argon: 0.9";
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
<https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-adequacy";
<https://w3id.org/delphi/ontology/hasScore> "0.9"^^xsd:double .
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--data-existence>
a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini>;
dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
<http://www.w3.org/2000/01/rdf-schema#label> "Data existence of buehler-2008-hbond-confinement-04 by Gemini 4 Argon: 0.95";
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
<https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-existence";
<https://w3id.org/delphi/ontology/hasScore> "0.95"^^xsd:double .
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--discriminating-power>
a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini>;
dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
<http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2008-hbond-confinement-04 by Gemini 4 Argon: 0.7";
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
<https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
<https://w3id.org/delphi/ontology/hasScore> "0.7"^^xsd:double .
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--operationalizability>
a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini>;
dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
<http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2008-hbond-confinement-04 by Gemini 4 Argon: 0.9";
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
<https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
<https://w3id.org/delphi/ontology/hasScore> "0.9"^^xsd:double .
<https://w3id.org/delphi/resource/claim/buehler-2008-hbond-confinement-04> <https://w3id.org/delphi/ontology/hasAssessment>
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini>,
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--analysis-feasibility>,
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--data-adequacy>,
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--data-existence>,
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--discriminating-power>,
<https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini--operationalizability> .
<https://w3id.org/delphi/resource/evidence/buehler-2008-hbond-confinement-04--gemini--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "Experimental protein structures across organisms from which beta-strand length distributions can be tabulated with DSSP";
<http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
prov:wasDerivedFrom <https://www.rcsb.org/> .
<https://w3id.org/delphi/resource/model/gemini-4-argon-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "gemini-4-argon-medium";
<http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon" .
}
sub:provenance {
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-1.json>,
<https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
prov:wasGeneratedBy sub:assessment .
sub:assessment a prov:Activity;
prov:qualifiedAssociation sub:assessmentPlan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium> .
sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}
sub:pubinfo {
<https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
"buehler-protein-materials" .
this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-04--gemini>;
<http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2008-hbond-confinement-04: resolvable-now, resolvability 0.88";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
npx:hasSignature "FqfrZGocRrj82lzTwC2IfKSNCYAEvsBodl+DeowseuYautISqr54Z9jKPTKECThxryTV+EnMeew1dAmdZIQlfVQRCDDcKm+vesdItC5ttZ7mSFP2CgxshiWclJFB4idfqRew4N20zbiR5IXVij79dUig3BzbyRn3Yjts5cGT6oiTgmDsRlo27m283jwrUvYncMLY4YYgm8iADdeFdWQvMZShMtTTB230CrAyQNSBbHc3IpPt+WRcyZZ4/70IpcxB2Zp6/wybgU0DPBrwi7UBKSU6+Spqyox7+5GsQkeKvsSLerj/5sa4fuVIo/PdDnXMz/GXPqy6RKAdeYShqKkxxQ==";
npx:hasSignatureTarget this:;
npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}