[ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/provenance", "@graph": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7", "@type": [ "http://www.w3.org/ns/prov#SoftwareAgent" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "delphisci claim tester (grok-4.7; cursor/aristotle-anatomy-b-3f24)" } ], "http://www.w3.org/ns/prov#actedOnBehalfOf": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "https://w3id.org/delphi/ontology/usesModel": [ { "@id": "https://w3id.org/delphi/resource/model/grok-4-7" } ] }, { "@id": "https://w3id.org/delphi/resource/model/grok-4-7", "http://purl.org/dc/terms/identifier": [ { "@value": "grok-4.7" } ], "@type": [ "https://w3id.org/delphi/ontology/LanguageModel" ] }, { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-pa04-24/result.json" } ], "http://www.w3.org/ns/prov#wasGeneratedBy": [ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/test" } ] }, { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/test", "@type": [ "http://www.w3.org/ns/prov#Activity" ], "http://www.w3.org/ns/prov#qualifiedAssociation": [ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/plan" } ], "http://www.w3.org/ns/prov#wasAssociatedWith": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ] }, { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/plan", "http://www.w3.org/ns/prov#hadPlan": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md" } ] } ] }, { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/assertion", "@graph": [ { "@id": "https://w3id.org/delphi/resource/assessment/aristotle-pa04-24--claim-test", "http://purl.org/dc/terms/description": [ { "@value": "MorphoSource media and physical objects were searched for eyelid, palpebra, nictitating, lower eyelid, upper eyelid, brille, and spectacle. All seven queries returned no records. The species tables were then read from the JATS XML of Morris and Parsons (Animals 2023, 13, 3656), fetched from PMC. Table A1 was counted by species row: a Y in the full-upper-lid column or the partial-upper-lid column is an upper eyelid that moves. Table A2 was counted by species: a Y in any column whose header names the lower lid is a lower-lid blink. Nictitating-membrane marks were not treated as an eyelid. Blank cells inherited from a merged header were not counted as species." } ], "@type": [ "https://w3id.org/delphi/ontology/Assessment" ], "http://www.w3.org/2000/01/rdf-schema#comment": [ { "@value": "Measured: 167 bird species with a full upper-lid blink in Table A1 (n = 592). Interpretation: Oviparous quadrupeds are lizards, tortoises, and crocodilians, the groups named in the claim's scope. Snakes are excluded because they are not quadrupeds. Birds are the comparison clause. 'No upper eyelid' and 'close the eye with the lower lid' are read as a statement about which lid moves, not as the mere presence of an eye or of eyelid skin in a dissection title. A nictitating membrane is not scored as an upper or a lower eyelid unless the text says it is one of those lids." } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Claim test of aristotle-pa04-24: mixed, confidence 0.74" } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-pa04-24/result.json" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "https://w3id.org/delphi/ontology/admissibleDatasets": [ { "@value": "MorphoSource media or physical-object metadata whose title, part, or description states the eyelid character, or a paper supplement table, checksummed, with one row per species and a column for the eyelid. A single species example is not a denominator. Wikipedia and an unscored narrative page are not admissible." } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "claim-test/0.1.0" } ], "https://w3id.org/delphi/ontology/dataKind": [ { "@value": "biological" } ], "https://w3id.org/delphi/ontology/disconfirmingObservation": [ { "@value": "Three or more species in either group whose record says the upper lid closes the eye, that a moving upper eyelid is present, or that the eye closes with a spectacle or with no eyelid." } ], "https://w3id.org/delphi/ontology/evidenceAgainst": [ { "@value": "MorphoSource returned no media and no physical objects for eyelid, palpebra, nictitating, brille, or spectacle. Those zeros are not evidence that an upper eyelid is absent. The species spelling Crocodylus hombifer is the spelling in Table A2. Zoo and internet video is not a random sample of birds." }, { "@value": "The bird clause refutes. Table A1 has 592 species rows, and 167 are marked for a full upper-lid blink, across Caprimulgiformes, Charadriiformes, Columbiformes, Passeriformes, Piciformes, Podargiformes, Psittaciformes, Pterocliformes, and Strigiformes. The refutation floor is 3. Another 105 rows are marked for a partial upper-lid blink. The paper's summary Table 1 says 166 species with an upper-lid blink out of 524 in which a blink was seen; the appendix row count used here is 167 full-upper-lid marks out of 592 species rows. Either count is above the floor." }, { "@value": "The quadruped clause supports on the crocodilian rows only. Table A2 lists 15 crocodilian species. Thirteen are marked in a column that names the lower lid, and the table has no upper-lid column. Paleosuchus trigonatus and Crocodylus mindorensis are marked only for a nictitating-membrane blink, so they are not in the thirteen. The pass floor is 8. Lizards and tortoises do not appear in the table, so this support does not cover those groups." }, { "@value": "The same crocodilian section says that in no case was there upper-lid blinking, and that in some cases the upper lid sank a little as the globe retracted. That sentence names an upper lid. It does not name three species in which the upper lid closes the eye, so it does not meet the refutation floor, and it also means the films do not show that crocodilians lack an upper eyelid." } ], "https://w3id.org/delphi/ontology/expectedObservation": [ { "@value": "At least 8 lizard, tortoise, or crocodilian species and at least 8 bird species with an explicit closing-lid sentence, and every such sentence names the lower lid." } ], "https://w3id.org/delphi/ontology/failCriterion": [ { "@value": "A clause refutes if at least 3 species in that group have a sentence that says the upper eyelid is present and moves, or that the upper lid closes the eye, or that the eye is closed by a spectacle or by no eyelid at all. One or two such species is underpowered. If one clause refutes and the other supports, the verdict is mixed and the clauses are named. If neither group has 3 species with an eyelid sentence, the verdict is inconclusive with reason not-operationalizable: naming an eye, an orbit, or a bone is not a statement about which lid moves. Zero search hits are not evidence that an upper eyelid is absent. If no admissible table states the character for any species, the verdict is inconclusive with reason data-unavailable." } ], "https://w3id.org/delphi/ontology/hasConfidence": [ { "@value": "0.74", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasEvidence": [ { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-pa04-24--claim-test--dataset-1" }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-pa04-24--claim-test--dataset-2" } ], "https://w3id.org/delphi/ontology/hasVerdict": [ { "@value": "mixed" } ], "https://w3id.org/delphi/ontology/hypothesis": [ { "@value": "If the claim holds, records that state how the eye is closed say that oviparous quadrupeds and birds lack a moving upper eyelid and close the eye with the lower lid." } ], "https://w3id.org/delphi/ontology/inferenceMethod": [ { "@value": "Count species, not specimens. Apply the floors separately to oviparous quadrupeds and to birds. A record that does not say which lid moves does not enter either count." } ], "https://w3id.org/delphi/ontology/passCriterion": [ { "@value": "The quadruped clause supports only if at least 8 species of lizards, tortoises, or crocodilians have a metadata or table sentence that says which lid closes the eye, and every one of those species says the lower lid closes it and none says a moving upper eyelid does. The bird clause supports on the same rule for at least 8 bird species. Overall supports only if both clauses support. A species with no eyelid sentence is not counted. Snakes are not quadrupeds and are not in the denominator." } ], "https://w3id.org/delphi/ontology/preregistered": [ { "@value": "false", "@type": "http://www.w3.org/2001/XMLSchema#boolean" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-pa04-24--claim-test--dataset-1", "http://purl.org/dc/terms/description": [ { "@value": "whether specimen metadata states which eyelid closes the eye" } ], "http://purl.org/dc/terms/license": [ { "@value": "unresolved. The search responses contain no license field." } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Dataset: MorphoSource media and physical-object search for eyelid terms" } ], "http://www.w3.org/ns/prov#atLocation": [ { "@id": "https://www.morphosource.org/api/media?q=brille&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/media?q=eyelid&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/media?q=lower+eyelid&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/media?q=nictitating&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/media?q=palpebra&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/media?q=spectacle&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/media?q=upper+eyelid&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/physical-objects?q=brille&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/physical-objects?q=eyelid&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/physical-objects?q=lower+eyelid&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/physical-objects?q=nictitating&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/physical-objects?q=palpebra&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/physical-objects?q=spectacle&search_field=all_fields&page=1&per_page=1" }, { "@id": "https://www.morphosource.org/api/physical-objects?q=upper+eyelid&search_field=all_fields&page=1&per_page=1" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://www.morphosource.org/" } ], "https://w3id.org/delphi/ontology/hasChecksum": [ { "@value": "sha256:1801268ca077c6b2e23ff494f3e5953f89c6cf7016ef18a0ef0e29ef9bd525bc" }, { "@value": "sha256:29bf3be72a44ad3c2b95c59db35ab9252c270ea6d4a8a6514c76609e8c0a1b8a" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-pa04-24--claim-test--dataset-2", "http://purl.org/dc/terms/description": [ { "@value": "species rows for upper-lid blinks in birds and lower-lid marks in crocodilians" } ], "http://purl.org/dc/terms/license": [ { "@value": "CC BY 4.0. The fetched JATS record gives license_ref https://creativecommons.org/licenses/by/4.0/." } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Dataset: Morris and Parsons 2023 appendix tables of blink type, carried in the JATS XML" } ], "http://www.w3.org/ns/prov#atLocation": [ { "@id": "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=10705787&rettype=xml&retmode=xml" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://www.mdpi.com/2076-2615/13/23/3656" } ], "https://w3id.org/delphi/ontology/hasChecksum": [ { "@value": "sha256:6d6da02a70403a91073f674dcbd90b791608ac83307aec9aac3132654d4f6f71" } ] }, { "@id": "https://w3id.org/delphi/resource/claim/aristotle-pa04-24", "https://w3id.org/delphi/ontology/hasAssessment": [ { "@id": "https://w3id.org/delphi/resource/assessment/aristotle-pa04-24--claim-test" } ] } ] }, { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/Head", "@graph": [ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] }, { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/pubinfo", "@graph": [ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-08T16:24:31.800Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/hasNanopubType": [ { "@id": "https://w3id.org/delphi/ontology/Assessment" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/delphi/resource/assessment/aristotle-pa04-24--claim-test" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Claim test of aristotle-pa04-24: mixed, confidence 0.74" } ], "https://w3id.org/delphi/ontology/domain": [ { "@id": "https://w3id.org/delphi/resource/domain/aristotle-biology" } ] }, { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "X3cTW4BqHpVskb/TMHVSChOlF+vDjOvICGKSsm6TmBHXd2F0X8HQyYsgCoAelljr1WJQle9ea8N0EL3rzo3w8vsx9WeOCw/JDvL5Pvg81kKDzPP2IrpzSzfscyJT8VMhsD0FRarLTzbQsTUNfCv5UsJcyVttCfw/APGSjjuAc2XhrvByucnTyJmw04+PkTz3x9O0TpjOI4Emx1XpaBDd1HzrqsbjuTDuZCdhBKDB7LuEOR5EqlAAEcd8+XErxs6zmFA7GYSZcf5JKEErvbrArb/fADIQkiWiRQWiA0YhSBbe9INnpnhp+qHoQo9ScmmlWuI6StpqfJo9gmM8xQc1DA==" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RAfEHB8c5ob8hdFShrekVebo96D2TSHJzfn0061Nde7nA" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ] } ] } ]