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https://w3id.org/np/RAe58o0xKQPsd6j5wDwzJOfRdj6a1ifWUV-VbOFUZqmrY

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Content

@prefix this: <https://w3id.org/np/RAe58o0xKQPsd6j5wDwzJOfRdj6a1ifWUV-VbOFUZqmrY> .
@prefix sub: <https://w3id.org/np/RAe58o0xKQPsd6j5wDwzJOfRdj6a1ifWUV-VbOFUZqmrY/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>
    a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci dataset-resolvability assessor (Gemini 4 Argon)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "As stated, the claim applies the analytical Inglis formula to the crack aspect ratios before (a_0/b_0 = 3, giving magnification 7.0) and after (a_1/b_1 = 0.11, giving magnification 1.22) yield-zone formation, which immediately yields 7.0 / 1.22 = 5.74 ≈ 5.7. Furthermore, the aspect-ratio change itself can be directly reproduced by running the open-access LAMMPS bead model. While the continuum Inglis solution is an idealized approximation for a discrete nonlinear network, the mathematical calculation and simulated geometry are both checkable now.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Substitute the initial crack aspect ratio (a_0 / b_0 = 3) and the post-yield transformed aspect ratio (a_1 / b_1 = 0.11) measured from the mesoscale network simulation into the Inglis elliptical hole formula sigma_tip = sigma_inf (1 + 2 a / b), and verify both the aspect ratios in LAMMPS and that the predicted stress magnification factor drops from 7.0 to 1.22 (a factor of 5.7).";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2009-helical-networks-08: resolvable-now, resolvability 0.83";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "The Inglis formula assumes an infinite, isotropic, homogeneous linear-elastic continuum under infinitesimal strain, which is only a heuristic approximation for a discrete, anisotropic, strongly nonlinear lattice at >100% strain.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.85"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-08--gemini--dataset-1>,
      <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-08--gemini--dataset-2>;
    <https://w3id.org/delphi/ontology/hasScore> "0.828"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "resolvable-now" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Analysis feasibility of buehler-2009-helical-networks-08 by Gemini 4 Argon: 0.9";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/analysis-feasibility";
    <https://w3id.org/delphi/ontology/hasScore> "0.9"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--data-adequacy>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2009-helical-networks-08 by Gemini 4 Argon: 0.75";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-adequacy";
    <https://w3id.org/delphi/ontology/hasScore> "0.75"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data existence of buehler-2009-helical-networks-08 by Gemini 4 Argon: 0.85";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-existence";
    <https://w3id.org/delphi/ontology/hasScore> "0.85"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2009-helical-networks-08 by Gemini 4 Argon: 0.75";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.75"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2009-helical-networks-08 by Gemini 4 Argon: 0.9";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
    <https://w3id.org/delphi/ontology/hasScore> "0.9"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-08> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--analysis-feasibility>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--data-adequacy>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-08--gemini--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "open-access derivation and measured crack aspect ratios before and after yield-zone formation";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: Ackbarow et al. 2009 PLoS ONE Full Text and Parameter Table";
    prov:wasDerivedFrom <https://doi.org/10.1371/journal.pone.0006015> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-08--gemini--dataset-2>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "open-source MD simulator to verify the undeformed and deformed crack aspect ratios in the 20-by-24 bead network";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: LAMMPS Molecular Dynamics Simulator";
    prov:wasDerivedFrom <https://www.lammps.org/> .
  
  <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gemini-4-argon-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-2.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-08--gemini>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2009-helical-networks-08: resolvable-now, resolvability 0.83";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "TlETOO9/JYgY6SzZyOkUOdu2k/V9StwT/5c95pVrrF4ocNxlP9rV7Yx7O+FmFDJueJE/f9O5J04WsXaNDD8l19Y6A1Tez16uDB2BgIiA3/2l8uL2CUxTk5fj+/M1MquvknFkYsJRejjHm3BSAuJ8A/NNUufZJDbLCZkj/yabdgjwD3/Z1My/fHS+DiWFl+5v/eRDSVW1kPZvNHla3JeFjKOMMoM09kAr77Mz7RKwDbbQJtCANDb56EgVB/Kj7+/rnRuHpwyjNa/+J+VH2HTZrDUWncEVsett+SJv+Da/d92Nw1e+3TXOOJSRXyMDAhceT71Ch9DGnfsJ3M3c7B79fA==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}