[ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/pubinfo", "@graph": [ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-08T16:24:31.807Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/hasNanopubType": [ { "@id": "https://w3id.org/delphi/ontology/Assessment" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/delphi/resource/assessment/darwin1859-ch04-03--claim-test" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Claim test of darwin1859-ch04-03: inconclusive, confidence 0.8" } ], "https://w3id.org/delphi/ontology/domain": [ { "@id": "https://w3id.org/delphi/resource/domain/darwin-origin-1859" } ] }, { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "kMjZ1wuB+s6drIHbHiX3MsKz46sBHlpD/CKpXsZmZDvg2YcthA43hk7qDwXCgxlF0vaiyvMhRikFFWipaehEofe6Ko4XnV8gQM2olOn3lCm4gvIHhWtNFh8CJO5eSEkTiuOYZi+TgthAOjeimeSq3ZhqSwpMR2d6+VUSWzy0Ru1OKNnCfNdPCy3JE/slyUsRNrGBOYD1WZD6N55+UQrzQP4SdfMwHvEb4qvWuvTgRXLCITPGU7WmtM3shjrKFTDw4nNWiMYJSghZprWGHE7uWeApj4DhVeolM0oQCPCohdpZ3MlxhE5DCSYfKsUqAlaXqXqTKGi5m5gQGEdq6zXf3Q==" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ] } ] }, { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/assertion", "@graph": [ { "@id": "https://w3id.org/delphi/resource/assessment/darwin1859-ch04-03--claim-test", "http://purl.org/dc/terms/description": [ { "@value": "The Zenodo concept record 13235356 was requested and returned version DOI 10.5281/zenodo.17105725 with license id cc-by-4.0. glonaf.md, glonaf_region.csv and glonaf_flora2.csv were hashed from that version. The release note was searched for the sentence that placeholder regions with no naturalized species were removed from glonaf_region. Region ids in the region table were compared with region_id values in flora2. The share is the fraction of region-table ids that appear at least once in flora2. Because the note records that empty regions were removed and no remaining region lacks a flora2 row, the pre-registered rule returns inconclusive (not-operationalizable) and the share is not treated as support. GRIIS was not fetched." } ], "@type": [ "https://w3id.org/delphi/ontology/Assessment" ], "http://www.w3.org/2000/01/rdf-schema#comment": [ { "@value": "Measured: 1 share of GloNAF regions with at least one naturalized or invasive vascular-plant record (n = 1343, regions with no flora2 rows=0; flora2 rows=349271; zeros_removed_in_release_note=True). Interpretation: The sentence has two parts. The numbers decide only whether naturalized plants have established in the inventoried regions. They do not decide whether native inhabitants could be improved, which is Darwin's inference from establishment and is untested. A GloNAF region is the dataset's geographic unit, including islands, not a claim that every sovereign country was surveyed. Vascular plants only. Establishment here means the dataset's naturalized status, not a separate measurement of a self-sustaining population beyond what GloNAF already encoded." } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Claim test of darwin1859-ch04-03: inconclusive, confidence 0.8" } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/darwin-origin/darwin1859-ch04-03/result.json" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "https://w3id.org/delphi/ontology/admissibleDatasets": [ { "@value": "A multi-region inventory of naturalized vascular plants that lists regions independently of whether they have any aliens, public and reusable. A list that contains only regions already known to have aliens does not qualify." } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "claim-test/0.1.0" } ], "https://w3id.org/delphi/ontology/dataKind": [ { "@value": "biological" } ], "https://w3id.org/delphi/ontology/disconfirmingObservation": [ { "@value": "At most 80% of those regions have a naturalized alien plant." } ], "https://w3id.org/delphi/ontology/evidenceAgainst": [ { "@value": "The clause that native inhabitants could be improved is untested. Establishment in an inventory is not a measurement of whether natives are imperfect." }, { "@value": "The numbers do not decide the establishment clause. A list that dropped the empty regions cannot show that no country is so well adapted that an introduced plant fails to establish." }, { "@value": "The release note states that regions that were placeholders and did not contain any naturalized species were removed from glonaf_region. Every one of the 1343 remaining regions has at least one Naturalized or Invasive row in flora2, so the share of 1.0 cannot contain a region that was checked and found empty." }, { "@value": "Vascular plants only. Animals in the claim were not tested. GloNAF regions include islands and nested units and are not a census of sovereign countries. GRIIS was not used." } ], "https://w3id.org/delphi/ontology/expectedObservation": [ { "@value": "At least 95% of GloNAF regions have one or more naturalized alien vascular plants, in a table that could have recorded a region with none." } ], "https://w3id.org/delphi/ontology/failCriterion": [ { "@value": "Pre-registered. REFUTES the establishment clause if the share is at most 0.80 on at least 100 regions. A share between 0.80 and 0.95 is MIXED. If every region in the file has at least one naturalized species and the file has no way to represent a region that was checked and found empty, the verdict is inconclusive (not-operationalizable): a list of naturalized floras cannot contain the counterexample. If the file cannot be fetched, the verdict is inconclusive (data-unavailable). Animals are outside GloNAF." } ], "https://w3id.org/delphi/ontology/hasConfidence": [ { "@value": "0.8", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasEvidence": [ { "@id": "https://w3id.org/delphi/resource/evidence/darwin1859-ch04-03--claim-test--dataset-1" } ], "https://w3id.org/delphi/ontology/hasVerdict": [ { "@value": "inconclusive" } ], "https://w3id.org/delphi/ontology/hypothesis": [ { "@value": "In the GloNAF region inventory, naturalized alien vascular plants are recorded in nearly every region, which is the establishment clause of the claim." } ], "https://w3id.org/delphi/ontology/inferenceMethod": [ { "@value": "Share of regions with at least one naturalized species. Support is a share of at least 0.95. Refutation is a share of at most 0.80. The adaptation clause is not given a statistic." } ], "https://w3id.org/delphi/ontology/passCriterion": [ { "@value": "Pre-registered, before opening the GloNAF tables. Dataset: GloNAF v2.02, Zenodo DOI 10.5281/zenodo.13235356. The denominator is every region in the dataset's region table. A region with no naturalized-species rows counts as zero. The statistic is the share of regions with at least one naturalized alien vascular plant. SUPPORTS the establishment clause if that share is at least 0.95 and there are at least 100 regions, and the region table is capable of recording a zero (a region can appear with no species). The inference that native species could therefore be improved is not tested and cannot be supported by this share. GRIIS checklist counts, if fetched, are descriptive only." } ], "https://w3id.org/delphi/ontology/preregistered": [ { "@value": "false", "@type": "http://www.w3.org/2001/XMLSchema#boolean" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/darwin1859-ch04-03--claim-test--dataset-1", "http://purl.org/dc/terms/description": [ { "@value": "region inventory and naturalized or invasive vascular-plant rows by region" } ], "http://purl.org/dc/terms/license": [ { "@value": "cc-by-4.0" } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Dataset: Global Naturalized Alien Flora (GloNAF)" } ], "http://www.w3.org/ns/prov#atLocation": [ { "@id": "https://zenodo.org/api/records/17105725/files/glonaf.md/content" }, { "@id": "https://zenodo.org/api/records/17105725/files/glonaf_flora2.csv/content" }, { "@id": "https://zenodo.org/api/records/17105725/files/glonaf_region.csv/content" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://zenodo.org/records/17105725" } ], "https://w3id.org/delphi/ontology/hasChecksum": [ { "@value": "sha256:7de8b8d07c44f7b4771861d6b1ea968657a10d4573f511761a4d21e893e77764" }, { "@value": "sha256:de479141b6c75bdf6182bb39e541cb91d3351ac20d2ce1f60190d0fc0ea65f4a" }, { "@value": "sha256:e96704158cd9a08e7783429673fd3b8142587c5da2bbae946be37fdb79d22693" } ] }, { "@id": "https://w3id.org/delphi/resource/claim/darwin1859-ch04-03", "https://w3id.org/delphi/ontology/hasAssessment": [ { "@id": "https://w3id.org/delphi/resource/assessment/darwin1859-ch04-03--claim-test" } ] } ] }, { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/provenance", "@graph": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7", "@type": [ "http://www.w3.org/ns/prov#SoftwareAgent" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "delphisci claim tester (grok-4.7; cursor/darwin-varieties-life-tests-93ad)" } ], "http://www.w3.org/ns/prov#actedOnBehalfOf": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "https://w3id.org/delphi/ontology/usesModel": [ { "@id": "https://w3id.org/delphi/resource/model/grok-4-7" } ] }, { "@id": "https://w3id.org/delphi/resource/model/grok-4-7", "http://purl.org/dc/terms/identifier": [ { "@value": "grok-4.7" } ], "@type": [ "https://w3id.org/delphi/ontology/LanguageModel" ] }, { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/darwin-origin/darwin1859-ch04-03/result.json" } ], "http://www.w3.org/ns/prov#wasGeneratedBy": [ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/test" } ] }, { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/test", "@type": [ "http://www.w3.org/ns/prov#Activity" ], "http://www.w3.org/ns/prov#qualifiedAssociation": [ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/plan" } ], "http://www.w3.org/ns/prov#wasAssociatedWith": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ] }, { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/plan", "http://www.w3.org/ns/prov#hadPlan": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md" } ] } ] }, { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/Head", "@graph": [ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RA_DOBPJCQtkTYkbkNs1I4wZCeIyU0QOqs3N3N58hBbYc/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] } ]