rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RAZSD7NEG0D9wNPmhbomJEyF64B_NRw8R4sb_z9hJSXBE" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RAZSD7NEG0D9wNPmhbomJEyF64B_NRw8R4sb_z9hJSXBE/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-resolvability-assessor-gemini-4-argon-medium" } } rows { name { value: "SoftwareAgent" } } rows { quad { s_iri { prefix_id: 9 } o_iri { prefix_id: 5 } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "label" } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "delphisci dataset-resolvability assessor (Gemini 4 Argon)" } } } rows { name { value: "actedOnBehalfOf" } } rows { prefix { value: "https://orcid.org/" } } rows { name { value: "0009-0007-4948-9192" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 11 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "usesModel" } } rows { prefix { value: "https://w3id.org/delphi/resource/model/" } } rows { name { value: "gemini-4-argon-medium" } } rows { quad { p_iri { prefix_id: 12 } o_iri { prefix_id: 13 } } } rows { prefix { value: "https://w3id.org/delphi/resource/assessment/" } } rows { name { value: "buehler-2010-helix-sheet-02--gemini" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 14 } p_iri { prefix_id: 7 } o_literal { lex: "The structural prediction implied by the claim\342\200\224that fibrous proteins undergoing strain-induced alpha-to-beta transitions possess alpha-helical domains longer than the critical ~26-residue length scale\342\200\224can be tested directly using sequence and structure annotations in UniProt and the PDB. Published WAXS, FTIR, and Raman studies on wool, hair, hard alpha-keratin, hagfish slime threads, and vimentin also confirm strain-induced beta-sheet formation in specific materials. However, because mechanical spectroscopy data are scattered across the literature and \'universal\' is not quantitatively bounded, existing open data only partially resolve the claim." } } } rows { name { value: "subject" } } rows { prefix { value: "https://w3id.org/delphi/resource/concept/" } } rows { name { value: "dataset-resolvability-0.2.0" } } rows { quad { p_iri { } o_iri { prefix_id: 15 } } } rows { name { value: "LLMClaimAssessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "Proposed test with existing data: Tabulate the length distribution of continuous alpha-helical coiled-coil domains in structural filament proteins (keratin, vimentin, lamin, myosin, fibrin) from UniProt and the PDB to test whether load-bearing filaments consistently exceed the 26-residue threshold, and cross-reference against published X-ray diffraction and Raman/FTIR tensile data documenting alpha-to-beta conversion. Confirmation requires that load-bearing alpha-helix-rich biomaterials predominantly have helix segments longer than 26 residues and exhibit beta-sheet formation under large tensile strain." } } } rows { quad { p_iri { name_id: 14 } o_literal { lex: "Gemini 4 Argon on buehler-2010-helix-sheet-02: partially-resolvable, resolvability 0.59" } } } rows { name { value: "wasAttributedTo" } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0" } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "Calling the mechanism \'universal\' across all alpha-helix-rich materials is broad and lacks a quantitative prevalence threshold for refutation." } } } rows { quad { o_literal { lex: "Experimental diffraction and spectroscopy measurements of strain-induced alpha-to-beta conversion in wool, hair, hoof, and cellular filaments are scattered across individual papers rather than compiled in a single open database." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.75" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "buehler-2010-helix-sheet-02--gemini--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 16 } } } rows { name { value: "buehler-2010-helix-sheet-02--gemini--dataset-2" } } rows { quad { o_iri { } } } rows { name { value: "hasScore" } } rows { quad { p_iri { prefix_id: 12 } o_literal { lex: "0.595" datatype: 1 } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { } o_literal { lex: "partially-resolvable" } } } rows { name { value: "buehler-2010-helix-sheet-02--gemini--analysis-feasibility" } } rows { name { value: "isPartOf" } } rows { quad { s_iri { prefix_id: 14 } p_iri { prefix_id: 7 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-analysis-feasibility" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 36 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Analysis feasibility of buehler-2010-helix-sheet-02 by Gemini 4 Argon: 0.75" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/analysis-feasibility" } } } rows { quad { p_iri { name_id: 32 } o_literal { lex: "0.75" datatype: 1 } } } rows { name { value: "buehler-2010-helix-sheet-02--gemini--data-adequacy" } } rows { quad { s_iri { prefix_id: 14 name_id: 37 } p_iri { prefix_id: 7 name_id: 35 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-data-adequacy" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 38 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Data adequacy of buehler-2010-helix-sheet-02 by Gemini 4 Argon: 0.5" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/data-adequacy" } } } rows { quad { p_iri { name_id: 32 } o_literal { lex: "0.5" datatype: 1 } } } rows { name { value: "buehler-2010-helix-sheet-02--gemini--data-existence" } } rows { quad { s_iri { prefix_id: 14 name_id: 39 } p_iri { prefix_id: 7 name_id: 35 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-data-existence" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 40 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Data existence of buehler-2010-helix-sheet-02 by Gemini 4 Argon: 0.65" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/data-existence" } } } rows { quad { p_iri { name_id: 32 } o_literal { lex: "0.65" datatype: 1 } } } rows { name { value: "buehler-2010-helix-sheet-02--gemini--discriminating-power" } } rows { quad { s_iri { prefix_id: 14 name_id: 41 } p_iri { prefix_id: 7 name_id: 35 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-discriminating-power" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 42 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Discriminating power of buehler-2010-helix-sheet-02 by Gemini 4 Argon: 0.55" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/discriminating-power" } } } rows { quad { p_iri { name_id: 32 } o_literal { lex: "0.55" datatype: 1 } } } rows { name { value: "buehler-2010-helix-sheet-02--gemini--operationalizability" } } rows { quad { s_iri { prefix_id: 14 name_id: 43 } p_iri { prefix_id: 7 name_id: 35 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-operationalizability" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 44 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Operationalizability of buehler-2010-helix-sheet-02 by Gemini 4 Argon: 0.55" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/operationalizability" } } } rows { quad { p_iri { name_id: 32 } o_literal { lex: "0.55" datatype: 1 } } } rows { prefix { id: 6 value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "buehler-2010-helix-sheet-02" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 6 name_id: 45 } p_iri { prefix_id: 12 } o_iri { prefix_id: 14 name_id: 19 } } } rows { quad { o_iri { name_id: 34 } } } rows { quad { o_iri { name_id: 37 } } } rows { quad { o_iri { name_id: 39 } } } rows { quad { o_iri { name_id: 41 } } } rows { quad { o_iri { name_id: 43 } } } rows { quad { s_iri { prefix_id: 16 name_id: 30 } p_iri { prefix_id: 7 name_id: 20 } o_literal { lex: "Curated protein sequence and domain annotations for keratins, intermediate filaments, myosin, and other fibrous alpha-helical proteins to measure coiled-coil segment lengths" } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 47 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Candidate dataset: UniProt Knowledgebase" } } } rows { name { value: "wasDerivedFrom" } } rows { prefix { id: 8 value: "https://www.uniprot.org/" } } rows { quad { p_iri { prefix_id: 5 name_id: 48 } o_iri { prefix_id: 8 name_id: 2 } } } rows { quad { s_iri { prefix_id: 16 name_id: 31 } p_iri { prefix_id: 7 name_id: 20 } o_literal { lex: "Experimental 3D structures of coiled-coil and intermediate filament proteins for secondary-structure length statistics via DSSP" } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 47 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Candidate dataset: RCSB Protein Data Bank" } } } rows { prefix { id: 1 value: "https://www.rcsb.org/" } } rows { quad { p_iri { prefix_id: 5 name_id: 48 } o_iri { prefix_id: 1 name_id: 2 } } } rows { name { value: "identifier" } } rows { quad { s_iri { prefix_id: 13 name_id: 18 } p_iri { prefix_id: 7 name_id: 49 } o_literal { lex: "gemini-4-argon-medium" } } } rows { name { value: "LanguageModel" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 50 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Gemini 4 Argon" } } } rows { quad { s_iri { prefix_id: 2 name_id: 4 } p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } g_iri { prefix_id: 2 name_id: 7 } } } rows { prefix { id: 3 value: "https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/" } } rows { name { value: "batch-3.json" } } rows { quad { p_iri { prefix_id: 5 name_id: 48 } o_iri { prefix_id: 3 name_id: 51 } } } rows { quad { o_iri { prefix_id: 15 name_id: 22 } } } rows { name { value: "wasGeneratedBy" } } rows { name { value: "assessment" } } rows { quad { p_iri { prefix_id: 5 name_id: 52 } o_iri { prefix_id: 2 } } } rows { name { value: "Activity" } } rows { quad { s_iri { name_id: 53 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 54 } } } rows { name { value: "qualifiedAssociation" } } rows { name { value: "assessmentPlan" } } rows { quad { p_iri { } o_iri { prefix_id: 2 } } } rows { name { value: "wasAssociatedWith" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 9 name_id: 12 } } } rows { name { value: "hadPlan" } } rows { prefix { id: 11 value: "https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/" } } rows { name { value: "README.md" } } rows { quad { s_iri { prefix_id: 2 name_id: 56 } p_iri { prefix_id: 5 name_id: 58 } o_iri { prefix_id: 11 } } } rows { prefix { id: 6 value: "https://w3id.org/delphi/resource/domain/" } } rows { name { value: "buehler-protein-materials" } } rows { quad { s_iri { prefix_id: 6 } p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "buehler-protein-materials" } g_iri { prefix_id: 2 name_id: 9 } } } rows { prefix { id: 14 value: "https://w3id.org/np/" } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 14 name_id: 1 } p_iri { prefix_id: 7 name_id: 61 } o_literal { lex: "2026-11-08T04:48:50.317Z" datatype: 2 } } } rows { name { value: "creator" } } rows { prefix { id: 8 value: "https://orcid.org/" } } rows { quad { p_iri { } o_iri { prefix_id: 8 name_id: 16 } } } rows { name { value: "license" } } rows { prefix { id: 16 value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 7 name_id: 63 } o_iri { prefix_id: 16 name_id: 2 } } } rows { prefix { id: 1 value: "http://purl.org/nanopub/x/" } } rows { name { value: "hasNanopubType" } } rows { quad { p_iri { prefix_id: 1 name_id: 64 } o_iri { prefix_id: 12 name_id: 23 } } } rows { name { value: "introduces" } } rows { prefix { id: 13 value: "https://w3id.org/delphi/resource/assessment/" } } rows { quad { p_iri { prefix_id: 1 name_id: 65 } o_iri { prefix_id: 13 name_id: 19 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Gemini 4 Argon on buehler-2010-helix-sheet-02: partially-resolvable, resolvability 0.59" } } } rows { name { value: "domain" } } rows { quad { p_iri { prefix_id: 12 name_id: 66 } o_iri { prefix_id: 6 name_id: 60 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 2 name_id: 67 } p_iri { prefix_id: 1 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "vGHVrNhexW0w3vCQOWhICJ3JTqJmuPpqgCy94Vd1bf3F+1CBMd3hp+A1b7aaNzGp4PmSPmrS0FlD+bmDcz50IaC1daddlHaIQlozNo4h0gpJP/msNXVV6YHJl6A7u26v2OdSZOmkRQSJDGE7XLCuC0FOScM+diEl+Fld3+sapUu3dQ4/mrVSFgoeSx4nDlc1HHpV8m6/eAjGo2QXtxPRGnfwJC3smAsDXXaepih9O+AKj6W/E2VlDKivENsh6mCA4UxOMTPomP5DQL2Y/nZy+SYCZ/gDZqql8KbaC7hylhI723e9zPc468xtpwZWvgcMBeVbvZcwLYETLhVAOVjjIA==" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 14 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 1 name_id: 72 } o_iri { prefix_id: 8 name_id: 16 } } }