. . . . "config.yaml" . "samples:\n A: data/samples/A.fastq\n B: data/samples/B.fastq\n\nbwa_map:\n rg: \"@RG\\\\tID:{sample}\\\\tSM:{sample}\"" . "config.yaml" . "samples:\n A: data/samples/A.fastq\n B: data/samples/B.fastq\n\nbwa_map:\n rg: \"@RG\\\\tID:{sample}\\\\tSM:{sample}\"" . . "RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4" . "2026-06-09T14:02:59.240893+00:00"^^ . . . . "calls/all.vcf" . "bcftools_call" . . "sorted_reads/A.bam" . "bwa_mem" . . "sorted_reads/B.bam" . "bwa_mem" . . "calls/positions.png" . "plot_positions" . . "calls/quals.svg" . "plot_quals" . . "sorted_reads/A.bam.bai" . "samtools_index" . . "sorted_reads/B.bam.bai" . "samtools_index" . "data/genome.fa" . "sorted_reads/A.bam" . "sorted_reads/A.bam.bai" . "sorted_reads/B.bam" . "sorted_reads/B.bam.bai" . "calls/all.vcf" . "data/genome.fa.amb" . "data/genome.fa.ann" . "data/genome.fa.pac" . "data/genome.fa.sa" . "sorted_reads/{sample}.bam" . "github.com/snakemake/snakemake-wrappers/bio/bwa/mem/environment.yaml@v5.7.0" . "calls/all.vcf" . "calls/positions.png" . "calls/all.vcf" . "calls/quals.svg" . "sorted_reads/{sample}.bam" . "sorted_reads/{sample}.bam.bai" . "github.com/snakemake/snakemake-wrappers/bio/samtools/index/environment.yaml@v5.7.0" . "from workflow configuration" . . . "workflow rules" . . . . . . "2026-06-09T16:02:59.283641+02:00"^^ . . "2026-06-09T14:02:59.240893+00:00"^^ . . . . "Snakemake workflow metadata: RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4" . "2026-06-09T16:02:59.283641+02:00"^^ . . "RSA" . "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkOFUnnRCp/k9/0ugvx8zQJ+Qc675W1Ug6F839+xvJ2QsSBu4iOJ1O2kJCmb3tALp3gJOt8sffRot3VrfY1hbgXxL7BVtDsfHHmXVff4YCeg5Ycdn5cDpLawDpAdYwMhK0LwIkZ3fwH9/o9JniYKXLV/jpF9bMKyiw/6tqlCHaMW1r8gzZzoxVIAakwvlABoY0iNoToLTlBRXEI4mLUNjDMnMwQgfh1KXMxMruNjW3wJyeDEIfa2ooAt0E4CRM9pkrEb37NzD9Jz8aSUFFY6BvIxF4ixK7rm6IUDvQ76LqXkEmgSeRv1kw7gnCe9wV/wHd0ZeW4heoBXmLHX3MvHfjwIDAQAB" . "Wuztqa0+1QCJi6339U64CZbW0l1jrodaQ4nTRSzuI9xS7ceiCRVEs/gOCfI5F041yKAZA1U3MjHkgPH185+VjjtPiSUQWg6QXf+e/mMyU5mpEjU/1J1v0/2rzwm29Ts+o7nh0ZBXOW2Y2Ergdt7P2ozwoKPeB65u9qZ2DFCquPcI/Ur773dl4YRPlPI+YUsw8LhCKRvGgus5CISroFPKlLkWgoUGg76raIgWgbfUK+wmBGoZAnnXC+UBTlPvLMcgjZ2dgMJzUSVMabw96nA1L/pxOT9Ntc6TMcxTAeJsKG4pRkcKZd4eHs5qd6QjSy4C7md/3jBHRq9WxCp9qMttrg==" . . .