https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY/Head https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY/assertion https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY/provenance https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY/pubinfo https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAZ2zg_dq0G0DtRjgMT6LYEOHgKFP1KgyBFqkotS_E_JY/assertion https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue http://purl.org/dc/terms/description Cells in each image were segmented with Cellpose CPSAM v2 on the Nebius Scientific AI Platform (claim-sources/cell-geometry/segment.py; operation IDs and model checksum in claim-sources/cell-geometry/results/<image>/cellpose.json). claim-sources/cell-geometry/analyze.py closes inter-cell gaps, finds points where three or more cells meet, estimates each wall's direction from wall pixels 0.08-0.25 median cell diameters from the junction, counts neighbours of cells fully surrounded by segmented cells, and runs the same measurement on three synthetic tilings (hexagonal lattice, brick wall, random Voronoi) as calibration. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/Assessment https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue http://www.w3.org/2000/01/rdf-schema#comment Measured: -0.9 Spearman rho, tissue area CV vs fraction of six-sided interior cells (n = 5, p = 0.0374). Interpretation: Tests the size-uniformity part only; 'forces uniform' is not measured. This is a second, multi-tissue attempt; the pre-registered within-RPE test of the same claim is test-data/claim-tests/thompson-growth-form/thompson1917-ch07-08/result.json. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue http://www.w3.org/2000/01/rdf-schema#label Claim test of thompson1917-ch07-08 (cellpose-multi-tissue): supports, confidence 0.5 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue http://www.w3.org/2000/01/rdf-schema#seeAlso https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/thompson-growth-form/thompson1917-ch07-08/cellpose-multi-tissue/result.json https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-opus-5-5 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/admissibleDatasets https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/assessmentType claim-test/0.1.0 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/dataKind biological https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/disconfirmingObservation Refutes if the across-tissue rho is >= 0. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/evidenceAgainst Exploratory, not pre-registered: the images were segmented and inspected before the pass criterion was written. Treat the verdict as hypothesis-generating; a pre-registered replication on new images is needed before it counts as a test. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/evidenceAgainst Only 5 tissues; the across-tissue correlation rests on five points. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/evidenceAgainst The random-Voronoi control shows the same within-image relation, so the result is a property of space-filling partitions in general and says nothing about forces. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/expectedObservation Exploratory, not pre-registered: the images were segmented and inspected before the pass criterion was written. Treat the verdict as hypothesis-generating; a pre-registered replication on new images is needed before it counts as a test. Supports if Spearman rho between tissue area CV and fraction of six-sided interior cells is <= -0.7 across usable tissues; mixed if between -0.7 and 0; refutes if >= 0. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/failCriterion Refutes if the across-tissue rho is >= 0. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/hasConfidence 0.5 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-08--claim-test--cellpose-multi-tissue--dataset-1 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-08--claim-test--cellpose-multi-tissue--dataset-2 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-08--claim-test--cellpose-multi-tissue--dataset-3 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-08--claim-test--cellpose-multi-tissue--dataset-4 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-08--claim-test--cellpose-multi-tissue--dataset-5 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/hasVerdict supports https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/hypothesis If hexagons are regular only where cells are equal in size, tissues with more uniform cell areas have a larger fraction of six-sided cells, and within a tissue cells in more size-heterogeneous neighbourhoods depart more from six sides. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/inferenceMethod Cells in each image were segmented with Cellpose CPSAM v2 on the Nebius Scientific AI Platform (claim-sources/cell-geometry/segment.py; operation IDs and model checksum in claim-sources/cell-geometry/results/<image>/cellpose.json). claim-sources/cell-geometry/analyze.py closes inter-cell gaps, finds points where three or more cells meet, estimates each wall's direction from wall pixels 0.08-0.25 median cell diameters from the junction, counts neighbours of cells fully surrounded by segmented cells, and runs the same measurement on three synthetic tilings (hexagonal lattice, brick wall, random Voronoi) as calibration. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/passCriterion Exploratory, not pre-registered: the images were segmented and inspected before the pass criterion was written. Treat the verdict as hypothesis-generating; a pre-registered replication on new images is needed before it counts as a test. Supports if Spearman rho between tissue area CV and fraction of six-sided interior cells is <= -0.7 across usable tissues; mixed if between -0.7 and 0; refutes if >= 0. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/ontology/preregistered false https://w3id.org/delphi/resource/claim/thompson1917-ch07-08 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/thompson1917-ch07-08--claim-test--cellpose-multi-tissue https://w3id.org/delphi/resource/evidence/thompson1917-ch07-08--claim-test--cellpose-multi-tissue--dataset-1 http://purl.org/dc/terms/description Homo sapiens, corneal endothelium (alizarin red, in situ) https://w3id.org/delphi/resource/evidence/thompson1917-ch07-08--claim-test--cellpose-multi-tissue--dataset-1 http://purl.org/dc/terms/license CC BY-SA 4.0 https://w3id.org/delphi/resource/evidence/thompson1917-ch07-08--claim-test--cellpose-multi-tissue--dataset-1 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