https://w3id.org/np/RAYzQDv8Rv7zahP9kgakwwhHgTZdFLZezI99NC49zt77U
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
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sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/assessment/aristotle-ga01-09--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "Downloaded the pre-registered testis csv. A seasonal contrast requires a mass column and at least two season labels, or months at least three months apart. Breeding and non-breeding medians are taken only from labels that say so. Almost indiscernible is a ratio of at most 0.10. One date is not assigned to a season.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: null median across species of non-breeding testis mass divided by breeding testis mass (n = 0, a ratio is computed only when both seasons have at least three birds and the labels name the seasons). Interpretation: Much enlarged at copulation and almost indiscernible afterwards is a within-species seasonal contrast, not a comparison of testis size across species. Almost indiscernible is operationalized as non-breeding mass at most 10 percent of breeding mass. A shrink that leaves half the mass is still a visible organ. The file is a common-garden gonad table; if it has one date, it does not contain this contrast.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ga01-09: inconclusive, confidence 0.75";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga01-09/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "A checksummed table of testis mass with a breeding contrast for the same species. One sampling date is not a breeding contrast. Article prose is not a table.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "none";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "Among at least five species, the typical non-breeding testis is still at least half the breeding mass.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "No mass from a journal article page is eligible after this file is read.",
"The csv was not opened before this registration. The name, size 1983, and file id 3746720 come from the Dryad API listing.";
<https://w3id.org/delphi/ontology/expectedObservation> "At least five seasonal species have non-breeding testis mass at most one tenth of their breeding testis mass.";
<https://w3id.org/delphi/ontology/failCriterion> "Pre-registered. Refutes, confidence 0.70, if at least five species meet the sample floor and the median of their ratios is at least 0.50. Mixed, confidence 0.60, if at least five species meet the floor and the median ratio is greater than 0.10 and below 0.50: the testes shrink, but they are not almost indiscernible. Inconclusive, reason underpowered, confidence 0.50, if a real two-season contrast exists for fewer than five species. Inconclusive, reason data-unavailable, confidence 0.75, if there is no mass column, or only one date or one season label. A single mass is not assigned to a season.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.75"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-ga01-09--claim-test--dataset-1>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "If the pattern holds, seasonal birds have much larger testes at breeding than afterwards, and the later mass is almost indiscernible next to the breeding mass.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Species are the units. The ratio uses medians of the recorded mass. The 0.10 and 0.50 cuts were fixed before the csv was opened. Fewer than five species cannot support or refute the plural claim.";
<https://w3id.org/delphi/ontology/passCriterion> "Pre-registered, before the csv is opened. The file is Common_garden_gonads_testis.csv from Dryad doi:10.5061/dryad.zkh1893k8, API file id 3746720, 1983 bytes, download https://datadryad.org/downloads/file_stream/3746720. A mass column has a header matching testis and (mass or weight or size). A season column has a header matching season, breeding, month, or date. Breeding and non-breeding are two distinct labels, or two months at least three months apart. For each species, the ratio is the median non-breeding mass divided by the median breeding mass. Almost indiscernible means that ratio is at most 0.10. Support, confidence 0.70, only if at least five species each have at least three birds in each season and every one of those ratios is at most 0.10, and each breeding median is greater than the non-breeding median.";
<https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
<https://w3id.org/delphi/resource/claim/aristotle-ga01-09> <https://w3id.org/delphi/ontology/hasAssessment>
<https://w3id.org/delphi/resource/assessment/aristotle-ga01-09--claim-test> .
<https://w3id.org/delphi/resource/evidence/aristotle-ga01-09--claim-test--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "testis mass by season";
dc:license "CC0-1.0";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Common-garden testis measurements";
prov:atLocation <https://datadryad.org/downloads/file_stream/3746720>;
prov:wasDerivedFrom <https://datadryad.org/dataset/doi:10.5061/dryad.zkh1893k8>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:d6b327bea7558986f9ec9ca43d7db0698e803586eea14eb06fd0efb629b6eb1b" .
}
sub:provenance {
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<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (Grok 4.7; cursor/aristotle-breeding-e-9310)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "Grok 4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga01-09/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
prov:qualifiedAssociation sub:plan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}
sub:pubinfo {
this: dc:created "2026-11-08T16:24:31.725Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-ga01-09--claim-test>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ga01-09: inconclusive, confidence 0.75";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
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npx:hasSignatureTarget this:;
npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
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