https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/Head
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http://www.nanopub.org/nschema#hasPublicationInfo
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http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.nanopub.org/nschema#Nanopublication
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assertion
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.w3.org/ns/prov#SoftwareAgent
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
http://www.w3.org/2000/01/rdf-schema#label
delphisci dataset-resolvability assessor (Gemini 4 Argon)
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
http://www.w3.org/ns/prov#actedOnBehalfOf
https://orcid.org/0009-0007-4948-9192
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/ontology/usesModel
https://w3id.org/delphi/resource/model/gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
http://purl.org/dc/terms/description
Within the stated scope of MD pull-out simulations of silk beta-sheet nanocrystals, uniform shear load sharing (cooperative rupture of ~3-4 H-bonds per turn) versus localized crack-like rupture and stick-slip H-bond reformation are directly measurable from trajectory coordinates and per-bond forces. Re-implementing poly-Ala beta-sheet pull-out simulations in GROMACS or NAMD is feasible within weeks and can cleanly distinguish uniform shear with stick-slip from brittle crack propagation. As with the companion claim, the lack of deposited trajectories and full-text simulation details keeps it at partially resolvable.
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
http://www.w3.org/2000/01/rdf-schema#comment
Proposed test with existing data: In steered MD pull-out simulations of central beta-strands from poly-Ala beta-sheet nanocrystals of small (<= 3 nm) versus large (>= 8 nm) width, measure the spatial distribution of hydrogen-bond shear forces along the strand prior to slip and count sequential H-bond rupture-and-reformation cycles during pull-out. Confirmation requires that small crystals exhibit nearly uniform H-bond load sharing across the strand followed by repetitive stick-slip reformation peaks, whereas large crystals fail by localized crack-like H-bond zipping with lower energy dissipation per unit length.
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
http://www.w3.org/2000/01/rdf-schema#label
Gemini 4 Argon on buehler-2010-nanoconfinement-02: partially-resolvable, resolvability 0.68
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/delphi/ontology/evidenceAgainst
Only the abstract is available in the local text corpus, leaving the exact pull-out rate, thermostatting, and boundary constraints unspecified here.
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/delphi/ontology/evidenceAgainst
Original simulation trajectories and pull-out setup files from the 2010 Nature Materials study are not publicly archived.
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/delphi/ontology/hasConfidence
0.8
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/delphi/ontology/hasEvidence
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-1
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/delphi/ontology/hasEvidence
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-2
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/delphi/ontology/hasScore
0.675
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/delphi/ontology/hasVerdict
partially-resolvable
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--analysis-feasibility
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
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http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--analysis-feasibility
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--analysis-feasibility
http://www.w3.org/2000/01/rdf-schema#label
Analysis feasibility of buehler-2010-nanoconfinement-02 by Gemini 4 Argon: 0.7
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--analysis-feasibility
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--analysis-feasibility
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/analysis-feasibility
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--analysis-feasibility
https://w3id.org/delphi/ontology/hasScore
0.7
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-adequacy
http://purl.org/dc/terms/isPartOf
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
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http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-adequacy
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-adequacy
http://www.w3.org/2000/01/rdf-schema#label
Data adequacy of buehler-2010-nanoconfinement-02 by Gemini 4 Argon: 0.6
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-adequacy
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-adequacy
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dataset-resolvability/0.2.0/data-adequacy
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https://w3id.org/delphi/ontology/hasScore
0.6
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http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
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http://www.w3.org/2000/01/rdf-schema#label
Data existence of buehler-2010-nanoconfinement-02 by Gemini 4 Argon: 0.6
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-existence
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-existence
https://w3id.org/delphi/ontology/assessmentType
dataset-resolvability/0.2.0/data-existence
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-existence
https://w3id.org/delphi/ontology/hasScore
0.6
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https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
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http://purl.org/dc/terms/subject
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power
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http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--discriminating-power
http://www.w3.org/2000/01/rdf-schema#label
Discriminating power of buehler-2010-nanoconfinement-02 by Gemini 4 Argon: 0.75
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--discriminating-power
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0.75
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Operationalizability of buehler-2010-nanoconfinement-02 by Gemini 4 Argon: 0.75
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--operationalizability
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https://w3id.org/delphi/ontology/hasScore
0.75
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https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
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https://w3id.org/delphi/resource/claim/buehler-2010-nanoconfinement-02
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-adequacy
https://w3id.org/delphi/resource/claim/buehler-2010-nanoconfinement-02
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--data-existence
https://w3id.org/delphi/resource/claim/buehler-2010-nanoconfinement-02
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--discriminating-power
https://w3id.org/delphi/resource/claim/buehler-2010-nanoconfinement-02
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini--operationalizability
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-1
http://purl.org/dc/terms/description
Atomic coordinates for antiparallel beta-sheet peptide assemblies to initialize strand pull-out simulations
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-1
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/EvidenceItem
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-1
http://www.w3.org/2000/01/rdf-schema#label
Candidate dataset: RCSB Protein Data Bank
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-1
http://www.w3.org/ns/prov#wasDerivedFrom
https://www.rcsb.org/
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-2
http://purl.org/dc/terms/description
Open-source MD suite for executing strand pull-out trajectories and analyzing hydrogen-bond lifespans and force distributions
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-2
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/EvidenceItem
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-2
http://www.w3.org/2000/01/rdf-schema#label
Candidate dataset: GROMACS Molecular Dynamics Package
https://w3id.org/delphi/resource/evidence/buehler-2010-nanoconfinement-02--gemini--dataset-2
http://www.w3.org/ns/prov#wasDerivedFrom
https://www.gromacs.org/
https://w3id.org/delphi/resource/model/gemini-4-argon-medium
http://purl.org/dc/terms/identifier
gemini-4-argon-medium
https://w3id.org/delphi/resource/model/gemini-4-argon-medium
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/LanguageModel
https://w3id.org/delphi/resource/model/gemini-4-argon-medium
http://www.w3.org/2000/01/rdf-schema#label
Gemini 4 Argon
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/provenance
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assertion
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assertion
http://www.w3.org/ns/prov#wasDerivedFrom
https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-3.json
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assertion
http://www.w3.org/ns/prov#wasDerivedFrom
https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assertion
http://www.w3.org/ns/prov#wasGeneratedBy
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assessment
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assessment
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.w3.org/ns/prov#Activity
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assessment
http://www.w3.org/ns/prov#qualifiedAssociation
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assessmentPlan
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assessment
http://www.w3.org/ns/prov#wasAssociatedWith
https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/assessmentPlan
http://www.w3.org/ns/prov#hadPlan
https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/pubinfo
https://w3id.org/delphi/resource/domain/buehler-protein-materials
http://www.w3.org/2000/01/rdf-schema#label
buehler-protein-materials
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc
http://purl.org/dc/terms/created
2026-11-08T04:48:50.317Z
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc
http://purl.org/dc/terms/creator
https://orcid.org/0009-0007-4948-9192
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc
http://purl.org/dc/terms/license
https://creativecommons.org/licenses/by/4.0/
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc
http://purl.org/nanopub/x/hasNanopubType
https://w3id.org/delphi/ontology/LLMClaimAssessment
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc
http://purl.org/nanopub/x/introduces
https://w3id.org/delphi/resource/assessment/buehler-2010-nanoconfinement-02--gemini
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc
http://www.w3.org/2000/01/rdf-schema#label
Gemini 4 Argon on buehler-2010-nanoconfinement-02: partially-resolvable, resolvability 0.68
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc
https://w3id.org/delphi/ontology/domain
https://w3id.org/delphi/resource/domain/buehler-protein-materials
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/sig
http://purl.org/nanopub/x/hasAlgorithm
RSA
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/sig
http://purl.org/nanopub/x/hasPublicKey
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https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/sig
http://purl.org/nanopub/x/hasSignature
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https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/sig
http://purl.org/nanopub/x/hasSignatureTarget
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc
https://w3id.org/np/RAYW-pZryd9Y5jF8MlzbytuTcq_k9ER1GVH_m3JhzLYDc/sig
http://purl.org/nanopub/x/signedBy
https://orcid.org/0009-0007-4948-9192