rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RAY7EMtkoI_zqKxnwl1HSvJNof6WwON5zTa_xwbgj_iRU" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RAY7EMtkoI_zqKxnwl1HSvJNof6WwON5zTa_xwbgj_iRU/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { prefix { value: "https://w3id.org/delphi/resource/assessment/" } } rows { name { value: "aristotle-ga03-21--claim-test" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 9 } p_iri { prefix_id: 7 } o_literal { lex: "The Dryad file request did not return an xlsx workbook, so the pre-registered fallback was used: the Animal Diversity Web account of Apis mellifera was coded for a sentence in which the queen produces both workers and new queens." } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Assessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Measured: 1 1 if the account states that the queen produces both workers and new queens (n = 1, see extra). Interpretation: Aristotle\'s kings are the reproductive females now called queens. \'Generate workers\' is maternity of workers. \'Generate their own kind\' is maternity of new queens, not of drones. Caste (worker versus queen) among daughters of a queen is nutritional as well as genetic; the test asks who the mother is, not what the larva was fed." } } } rows { name { value: "label" } } rows { quad { p_iri { } o_literal { lex: "Claim test of aristotle-ga03-21: supports, confidence 0.55" } } } rows { name { value: "seeAlso" } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga03-21/" } } rows { name { value: "result.json" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-claim-tester-grok-4-7" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 13 } } } rows { name { value: "admissibleDatasets" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "Open genotype tables for Apis mellifera in which a queen genotype and offspring genotypes are labeled, or a public species account of Apis mellifera that states caste maternity. Aristotle\'s \'kings\' are mapped to queens before scoring." } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { } o_literal { lex: "claim-test/0.1.0" } } } rows { name { value: "dataKind" } } rows { quad { p_iri { } o_literal { lex: "biological" } } } rows { name { value: "disconfirmingObservation" } } rows { quad { p_iri { } o_literal { lex: "Worker genotypes are incompatible with the queen as mother in most colonies, or the account states that workers or drones, rather than the queen, produce the workers or the new queens." } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "A species account is a compilation, not a pedigree. If the fallback is used, confidence will be at most 0.55." } } } rows { quad { o_literal { lex: "The ADW account URL returned HTTP 200 on HEAD and was not downloaded." } } } rows { quad { o_literal { lex: "The Dryad landing page was read for the file name Data.xlsx and the abstract\'s description of worksheets. The workbook itself was not downloaded. Direct Dryad file requests returned an Anubis challenge page on a header probe, so retrieval may fail." } } } rows { name { value: "expectedObservation" } } rows { quad { p_iri { } o_literal { lex: "Workers, and new queens where they are in the same file, carry the colony queen\'s alleles in the pattern expected if she is their mother; or, if only the species account is reachable, that account states that the queen produces both castes." } } } rows { name { value: "failCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered. On the genotype file, refutes if fewer than 50 percent of colonies pass the worker test, or if daughter-queen rows exist and fewer than 50 percent are mother-compatible. Mixed if the worker component passes and the own-kind component is absent from the file or falls between the pass and fail rates. On the fallback account, refutes if the text states that the queen does not produce workers or does not produce new queens; mixed if only one of the two castes is attributed to the queen; inconclusive with reason data-unavailable if neither the workbook nor the account can be fetched; inconclusive with reason not-operationalizable if the account has no statement about who produces workers or queens." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.55" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "aristotle-ga03-21--claim-test--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 14 } } } rows { name { value: "aristotle-ga03-21--claim-test--dataset-2" } } rows { quad { o_iri { } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "supports" } } } rows { name { value: "hypothesis" } } rows { quad { p_iri { } o_literal { lex: "If the hive\'s \'king\' is the queen and she generates both her own kind and the workers, then worker genotypes are compatible with the queen as mother and daughter queens are also her offspring; failing a genotype file, a public life-history account states that the queen produces both workers and new queens." } } } rows { name { value: "inferenceMethod" } } rows { quad { p_iri { } o_literal { lex: "Allele-inclusion check of offspring against the deduced queen genotype, with the colony and worker thresholds above. The species-account fallback is sentence coding and is used only when the workbook is not retrievable. A conjunction is supported only when both castes are measured and pass." } } } rows { name { value: "passCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered. Primary dataset is Dryad 10.5061/dryad.f4m18 (Data.xlsx). A worker is mother-compatible at a locus when the queen genotype at that locus is non-missing and the worker carries at least one of the queen\'s alleles. A worker counts if at least two loci are comparable. A colony passes if at least 95 percent of its counted workers are mother-compatible. The worker component passes if at least 90 percent of colonies pass and at least 100 workers are counted. The own-kind component passes if rows labeled as daughter queens, gynes, or queen offspring exist and at least 95 percent of those counted individuals are mother-compatible with the colony queen, with at least 10 such individuals. The claim is supported only if both components pass. If the download is not an xlsx workbook (HTML bot wall or any other type), the primary dataset is unavailable and the pre-registered fallback is the Animal Diversity Web account of Apis mellifera: supported if the text states that the queen produces both workers and new queens (or gynes); the fallback cannot score higher than the text rule below." } } } rows { name { value: "preregistered" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#boolean" } } rows { quad { p_iri { } o_literal { lex: "false" datatype: 2 } } } rows { prefix { value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "aristotle-ga03-21" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 15 } p_iri { prefix_id: 10 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { s_iri { prefix_id: 14 name_id: 30 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "planned genotype file; the response was not an xlsx workbook" } } } rows { name { value: "license" } } rows { quad { p_iri { name_id: 39 } o_literal { } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 40 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: Dryad workbook was not retrievable" } } } rows { name { value: "atLocation" } } rows { prefix { value: "https://datadryad.org/downloads/file_stream/" } } rows { name { value: "22989" } } rows { quad { p_iri { prefix_id: 5 name_id: 41 } o_iri { prefix_id: 16 } } } rows { name { value: "wasDerivedFrom" } } rows { prefix { id: 6 value: "https://doi.org/10.5061/" } } rows { name { value: "dryad.f4m18" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 6 } } } rows { name { value: "hasChecksum" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "sha256:f37d088fb8941a34df30040cb7f3add2a6ab2b2438f15c8aa35787b671ffd805" } } } rows { quad { s_iri { prefix_id: 14 name_id: 31 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "fallback life-history account of queen maternity" } } } rows { quad { p_iri { name_id: 39 } o_literal { lex: "Animal Diversity Web; coded, not redistributed" } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 40 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: Animal Diversity Web account of Apis mellifera" } } } rows { prefix { id: 8 value: "https://animaldiversity.org/accounts/Apis_mellifera/" } } rows { quad { p_iri { prefix_id: 5 name_id: 41 } o_iri { prefix_id: 8 name_id: 2 } } } rows { quad { p_iri { prefix_id: 5 name_id: 43 } } } rows { quad { p_iri { prefix_id: 10 name_id: 45 } o_literal { lex: "sha256:d9d28bee8bb7d1a0f51b27788d743f16c6e7520a139bc6d6e2d9472b343e7163" } } } rows { name { value: "SoftwareAgent" } } rows { quad { s_iri { prefix_id: 13 name_id: 20 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 46 } g_iri { prefix_id: 2 name_id: 7 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "delphisci claim tester (grok-4.7; bc-379d5832-d98e-4d52-9a6a-8932cf4d582a)" } } } rows { name { value: "actedOnBehalfOf" } } rows { prefix { id: 1 value: "https://orcid.org/" } } rows { name { value: "0009-0007-4948-9192" } } rows { quad { p_iri { prefix_id: 5 name_id: 47 } o_iri { prefix_id: 1 } } } rows { name { value: "usesModel" } } rows { prefix { id: 3 value: "https://w3id.org/delphi/resource/model/" } } rows { name { value: "grok-4-7" } } rows { quad { p_iri { prefix_id: 10 } o_iri { prefix_id: 3 } } } rows { name { value: "identifier" } } rows { quad { s_iri { name_id: 50 } p_iri { prefix_id: 7 } o_literal { lex: "grok-4.7" } } } rows { name { value: "LanguageModel" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 52 } } } rows { quad { s_iri { prefix_id: 2 name_id: 4 } p_iri { prefix_id: 5 name_id: 19 } o_iri { prefix_id: 13 } } } rows { quad { p_iri { prefix_id: 5 name_id: 43 } o_iri { prefix_id: 12 name_id: 18 } } } rows { name { value: "wasGeneratedBy" } } rows { name { value: "test" } } rows { quad { p_iri { prefix_id: 5 name_id: 53 } o_iri { prefix_id: 2 } } } rows { name { value: "plan" } } rows { name { value: "hadPlan" } } rows { prefix { id: 15 value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/" } } rows { name { value: "README.md" } } rows { quad { s_iri { } p_iri { prefix_id: 5 } o_iri { prefix_id: 15 } } } rows { name { value: "Activity" } } rows { quad { s_iri { prefix_id: 2 name_id: 54 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 58 } } } rows { name { value: "qualifiedAssociation" } } rows { quad { p_iri { } o_iri { prefix_id: 2 name_id: 55 } } } rows { name { value: "wasAssociatedWith" } } rows { quad { p_iri { prefix_id: 5 name_id: 60 } o_iri { prefix_id: 13 name_id: 20 } } } rows { prefix { id: 9 value: "https://w3id.org/np/" } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 9 name_id: 1 } p_iri { prefix_id: 7 name_id: 61 } o_literal { lex: "2026-11-08T16:24:31.739Z" datatype: 3 } g_iri { prefix_id: 2 name_id: 9 } } } rows { name { value: "creator" } } rows { quad { p_iri { prefix_id: 7 name_id: 62 } o_iri { prefix_id: 1 name_id: 48 } } } rows { prefix { id: 16 value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 7 name_id: 39 } o_iri { prefix_id: 16 name_id: 2 } } } rows { prefix { id: 6 value: "http://purl.org/nanopub/x/" } } rows { name { value: "hasNanopubType" } } rows { quad { p_iri { prefix_id: 6 name_id: 63 } o_iri { prefix_id: 10 name_id: 14 } } } rows { name { value: "introduces" } } rows { prefix { id: 14 value: "https://w3id.org/delphi/resource/assessment/" } } rows { quad { p_iri { prefix_id: 6 name_id: 64 } o_iri { prefix_id: 14 name_id: 12 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Claim test of aristotle-ga03-21: supports, confidence 0.55" } } } rows { name { value: "domain" } } rows { prefix { id: 8 value: "https://w3id.org/delphi/resource/domain/" } } rows { name { value: "aristotle-biology" } } rows { quad { p_iri { prefix_id: 10 name_id: 65 } o_iri { prefix_id: 8 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 2 } p_iri { prefix_id: 6 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "JghFTe0Jx3CMuAQftnyp+s2hAxdDwZMc3tcgbR6D1gtxt5B4Yef+YRXs4KivVsDxn1iw1nyx90XMDAdvxqz7DaPmb4pAkGVm4OBW1chs8ciPF+arLxkjlf0SC7L+sslBssDYlTO4TRWWZ9FkH9i+t7ndmYGqyxV9i5p3HhnlLgaoOjPVBLJ7TdRe1zaNbFG3I94N2wgG7dhCv543ajSw6ieRvSXNKGe2WYZqBU2ojSuzMU+qcTh+DYx1kGV7c1M1vJu2y5XNzJYYFBR0zRZclhZTwLb2WiAIwckDnJSvKGj7gtauAsoPp1q8gC6mof/W/NSJ2cKdu78u96/c2ZpAVw==" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 9 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 6 name_id: 72 } o_iri { prefix_id: 1 name_id: 48 } } }