@prefix this: <https://w3id.org/np/RAWJh_teyALvl_iYPPRcPsMzo4BQCtEp3TFDj0hP1zFTU> .
@prefix sub: <https://w3id.org/np/RAWJh_teyALvl_iYPPRcPsMzo4BQCtEp3TFDj0hP1zFTU/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
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    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
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sub:assertion {
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    a prov:SoftwareAgent;
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  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "Because the claim is explicitly scoped to the coarse-grained alpha-helix network model and the paper is open access with its full mathematical formulation and model parameters, re-running the tensile fracture series in LAMMPS is straightforward analysis rather than new experimental work. The comparison between the one-parameter Inglis-based blunting law and standard LEFM scaling across crack fractions from 0.1 to 0.8 is quantitatively sharp and fast to compute on modern hardware. Scores are slightly below 1.0 only because the authors' original LAMMPS scripts are not archived, requiring reconstruction from the published equations and parameter table.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Re-implement the 24 nm x 24 nm square-lattice coarse-grained alpha-helix network in LAMMPS using the piecewise-linear and bending parameters from the open-access article, run uniaxial tensile simulations for central crack fractions chi from 0.1 to 0.8, and fit the single blunting parameter C in Equation (6) by least squares against normalized failure stress. The claim is confirmed if the best-fit parameter is near C = 1.102 and achieves a substantially lower residual error across chi than the parameter-free LEFM scaling law, and refuted if the one-parameter blunting relation fails to outperform LEFM or yields a substantially different C under the stated model.";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2009-helical-networks-09: resolvable-now, resolvability 0.82";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
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    <https://w3id.org/delphi/ontology/evidenceAgainst> "Original LAMMPS input scripts and raw simulation trajectories were offered only upon request rather than deposited in an open repository.",
      "The blunting parameter C is fitted to the simulation series itself rather than predicted independently from first principles.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.85"^^xsd:double;
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    <https://w3id.org/delphi/ontology/hasScore> "0.825"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "resolvable-now" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
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  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
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  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2009-helical-networks-09 by Gemini 4 Argon: 0.85";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.85"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2009-helical-networks-09 by Gemini 4 Argon: 0.9";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
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  <https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-09> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini--analysis-feasibility>,
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      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-09--gemini--discriminating-power>,
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  <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-09--gemini--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "Open-access full text containing the analytical crack-blunting derivation, coarse-grained potential equations, network geometry, and parameter values";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: Ackbarow et al. 2009 full text and parameter specification (PLoS ONE)";
    prov:wasDerivedFrom <https://doi.org/10.1371/journal.pone.0006015> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-09--gemini--dataset-2>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "Open-source molecular dynamics package used in the original study to simulate the mesoscale bead network across crack sizes";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: LAMMPS Molecular Dynamics Simulator";
    prov:wasDerivedFrom <https://www.lammps.org/> .
  
  <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gemini-4-argon-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-3.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
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  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
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sub:pubinfo {
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      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
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    dc:license <https://creativecommons.org/licenses/by/4.0/>;
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    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
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