https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc/Head https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc/assertion https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc/provenance https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc/pubinfo https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc/assertion https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test http://purl.org/dc/terms/description analysis.py reads the Dryad dataset page for doi:10.5061/dryad.brv15dv9t and downloads its README. It requests the WoRMS trait JSON for AphiaID 123082 and lists every measurement type. A gonad count would be a file named as a table, a README that describes a gonad-count table, or a trait whose type or value matches gonad. None of those is present, so no species is scored. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/Assessment https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test http://www.w3.org/2000/01/rdf-schema#comment Measured: null null (n = 0). Interpretation: Aristotle's eggs are the gonads. Five and odd is one clause: the count is five. Beneath the stomach is position; it is scored only if the same table codes where the gonads lie. The scope is sea urchins, class Echinoidea, regular and irregular. A table that covers only regular urchins can support the claim for the species it scores, and the denominator is those species. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test http://www.w3.org/2000/01/rdf-schema#label Claim test of aristotle-ha04-11: inconclusive, confidence 0.72 https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test http://www.w3.org/2000/01/rdf-schema#seeAlso https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha04-11/result.json https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7 https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/admissibleDatasets A public species-level table of Echinoidea with a numeric gonad count. Occurrence records, genomes, and gonad mass or gonad index without a count of the organs are not admissible as support or refutation. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/assessmentType claim-test/0.1.0 https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/dataKind none https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/disconfirmingObservation Any scored echinoid species whose gonad count is not five. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/evidenceAgainst No species was scored. The position of the gonads relative to the stomach was not tested. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/evidenceAgainst The Dryad README describes genomic assemblies, chronograms, and sequence matrices. The WoRMS record for Echinoidea has nine trait types and none is a gonad count. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/evidenceAgainst This is a finding about these two sources. It is not a count of gonads in sea urchins. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/expectedObservation Every scored echinoid species has five gonads. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/failCriterion The claim fails if any scored species has a gonad count other than five. One such species is enough. If every scored species has five but fewer than 10 species are scored, the verdict is inconclusive with reason underpowered. If the fetched sources have no gonad-count field, the verdict is inconclusive with reason data-unavailable. A sequencing tissue labelled gonad, a gonad-weight measurement, and a taxonomic list without a count are not a gonad count. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/hasConfidence 0.72 https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-1 https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-2 https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/hasVerdict inconclusive https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/hypothesis Every sea urchin has five so-called eggs, an odd number, lying beneath the stomach. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/inferenceMethod Count scored species. Support requires n at least 10 and every count equal to 5. Any count other than 5 refutes, whatever n is. No gonad-count field is inconclusive, reason data-unavailable. All counts equal to 5 with n under 10 is inconclusive, reason underpowered. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/passCriterion A species-level table of sea urchins (Echinoidea) must code the number of gonads, Aristotle's eggs. The claim passes if every scored species has exactly five gonads and at least 10 species are scored. https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/ontology/preregistered false https://w3id.org/delphi/resource/claim/aristotle-ha04-11 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/aristotle-ha04-11--claim-test https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-1 http://purl.org/dc/terms/description File list and README. The deposit is assemblies, trees, and sequence matrices for 66 terminals, not a gonad count. https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-1 http://purl.org/dc/terms/license CC0-1.0 https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-1 http://www.w3.org/2000/01/rdf-schema#label Dataset: Mongiardino Koch et al., echinoid phylogenomics, Dryad https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-1 http://www.w3.org/ns/prov#atLocation https://datadryad.org/downloads/file_stream/1509126 https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-1 http://www.w3.org/ns/prov#wasDerivedFrom https://datadryad.org/dataset/doi:10.5061/dryad.brv15dv9t https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:7bf15e913b78a6a0cd838c229aa73b586895dca1c7a372cad67f990a670385f5 https://w3id.org/delphi/resource/evidence/aristotle-ha04-11--claim-test--dataset-2 http://purl.org/dc/terms/description Trait record for the class. Skeleton, size, development, brooding, and mobility. 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