rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RAVsbLO4SbkecCL9zBoBbKqe4f4Q-ScVTPYKtFhTgo0Oc/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { prefix { value: "https://w3id.org/delphi/resource/assessment/" } } rows { name { value: "aristotle-ha04-11--claim-test" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 9 } p_iri { prefix_id: 7 } o_literal { lex: "analysis.py reads the Dryad dataset page for doi:10.5061/dryad.brv15dv9t and downloads its README. It requests the WoRMS trait JSON for AphiaID 123082 and lists every measurement type. A gonad count would be a file named as a table, a README that describes a gonad-count table, or a trait whose type or value matches gonad. None of those is present, so no species is scored." } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Assessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Measured: null null (n = 0). Interpretation: Aristotle\'s eggs are the gonads. Five and odd is one clause: the count is five. Beneath the stomach is position; it is scored only if the same table codes where the gonads lie. The scope is sea urchins, class Echinoidea, regular and irregular. A table that covers only regular urchins can support the claim for the species it scores, and the denominator is those species." } } } rows { name { value: "label" } } rows { quad { p_iri { } o_literal { lex: "Claim test of aristotle-ha04-11: inconclusive, confidence 0.72" } } } rows { name { value: "seeAlso" } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha04-11/" } } rows { name { value: "result.json" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-claim-tester-grok-4-7" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 13 } } } rows { name { value: "admissibleDatasets" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "A public species-level table of Echinoidea with a numeric gonad count. Occurrence records, genomes, and gonad mass or gonad index without a count of the organs are not admissible as support or refutation." } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { } o_literal { lex: "claim-test/0.1.0" } } } rows { name { value: "dataKind" } } rows { quad { p_iri { } o_literal { lex: "none" } } } rows { name { value: "disconfirmingObservation" } } rows { quad { p_iri { } o_literal { lex: "Any scored echinoid species whose gonad count is not five." } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "No species was scored. The position of the gonads relative to the stomach was not tested." } } } rows { quad { o_literal { lex: "The Dryad README describes genomic assemblies, chronograms, and sequence matrices. The WoRMS record for Echinoidea has nine trait types and none is a gonad count." } } } rows { quad { o_literal { lex: "This is a finding about these two sources. It is not a count of gonads in sea urchins." } } } rows { name { value: "expectedObservation" } } rows { quad { p_iri { } o_literal { lex: "Every scored echinoid species has five gonads." } } } rows { name { value: "failCriterion" } } rows { quad { p_iri { } o_literal { lex: "The claim fails if any scored species has a gonad count other than five. One such species is enough. If every scored species has five but fewer than 10 species are scored, the verdict is inconclusive with reason underpowered. If the fetched sources have no gonad-count field, the verdict is inconclusive with reason data-unavailable. A sequencing tissue labelled gonad, a gonad-weight measurement, and a taxonomic list without a count are not a gonad count." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.72" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "aristotle-ha04-11--claim-test--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 14 } } } rows { name { value: "aristotle-ha04-11--claim-test--dataset-2" } } rows { quad { o_iri { } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "inconclusive" } } } rows { name { value: "hypothesis" } } rows { quad { p_iri { } o_literal { lex: "Every sea urchin has five so-called eggs, an odd number, lying beneath the stomach." } } } rows { name { value: "inferenceMethod" } } rows { quad { p_iri { } o_literal { lex: "Count scored species. Support requires n at least 10 and every count equal to 5. Any count other than 5 refutes, whatever n is. No gonad-count field is inconclusive, reason data-unavailable. All counts equal to 5 with n under 10 is inconclusive, reason underpowered." } } } rows { name { value: "passCriterion" } } rows { quad { p_iri { } o_literal { lex: "A species-level table of sea urchins (Echinoidea) must code the number of gonads, Aristotle\'s eggs. The claim passes if every scored species has exactly five gonads and at least 10 species are scored." } } } rows { name { value: "preregistered" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#boolean" } } rows { quad { p_iri { } o_literal { lex: "false" datatype: 2 } } } rows { prefix { value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "aristotle-ha04-11" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 15 } p_iri { prefix_id: 10 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { s_iri { prefix_id: 14 name_id: 30 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "File list and README. The deposit is assemblies, trees, and sequence matrices for 66 terminals, not a gonad count." } } } rows { name { value: "license" } } rows { quad { p_iri { name_id: 39 } o_literal { lex: "CC0-1.0" } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 40 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: Mongiardino Koch et al., echinoid phylogenomics, Dryad" } } } rows { name { value: "atLocation" } } rows { prefix { value: "https://datadryad.org/downloads/file_stream/" } } rows { name { value: "1509126" } } rows { quad { p_iri { prefix_id: 5 name_id: 41 } o_iri { prefix_id: 16 } } } rows { name { value: "wasDerivedFrom" } } rows { prefix { id: 6 value: "https://datadryad.org/dataset/doi:10.5061/" } } rows { name { value: "dryad.brv15dv9t" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 6 } } } rows { name { value: "hasChecksum" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "sha256:7bf15e913b78a6a0cd838c229aa73b586895dca1c7a372cad67f990a670385f5" } } } rows { quad { s_iri { prefix_id: 14 name_id: 31 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "Trait record for the class. Skeleton, size, development, brooding, and mobility. No gonad count." } } } rows { quad { p_iri { name_id: 39 } o_literal { lex: "CC BY" } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 40 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: WoRMS traits for Echinoidea, AphiaID 123082" } } } rows { prefix { id: 8 value: "https://www.marinespecies.org/rest/AphiaAttributesByAphiaID/" } } rows { name { value: "123082" } } rows { quad { p_iri { prefix_id: 5 name_id: 41 } o_iri { prefix_id: 8 name_id: 46 } } } rows { prefix { id: 1 value: "https://www.marinespecies.org/" } } rows { name { value: "aphia.php?p=taxdetails&id=123082" } } rows { quad { p_iri { prefix_id: 5 name_id: 43 } o_iri { prefix_id: 1 name_id: 47 } } } rows { quad { p_iri { prefix_id: 10 name_id: 45 } o_literal { lex: "sha256:61c41e8c7360e291525211bef34780959fe4b46fa254c59b4749aa1ec427e72d" } } } rows { name { value: "SoftwareAgent" } } rows { quad { s_iri { prefix_id: 13 name_id: 20 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 48 } g_iri { prefix_id: 2 name_id: 7 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "delphisci claim tester (Grok 4.7; cursor/aristotle-life-history-c-7ef1)" } } } rows { name { value: "actedOnBehalfOf" } } rows { prefix { id: 3 value: "https://orcid.org/" } } rows { name { value: "0009-0007-4948-9192" } } rows { quad { p_iri { prefix_id: 5 name_id: 49 } o_iri { prefix_id: 3 } } } rows { name { value: "usesModel" } } rows { prefix { id: 12 value: "https://w3id.org/delphi/resource/model/" } } rows { name { value: "grok-4-7" } } rows { quad { p_iri { prefix_id: 10 } o_iri { prefix_id: 12 } } } rows { name { value: "identifier" } } rows { quad { s_iri { name_id: 52 } p_iri { prefix_id: 7 } o_literal { lex: "Grok 4.7" } } } rows { name { value: "LanguageModel" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 54 } } } rows { quad { s_iri { prefix_id: 2 name_id: 4 } p_iri { prefix_id: 5 name_id: 19 } o_iri { prefix_id: 13 } } } rows { prefix { id: 15 value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha04-11/" } } rows { quad { p_iri { prefix_id: 5 name_id: 43 } o_iri { prefix_id: 15 name_id: 18 } } } rows { name { value: "wasGeneratedBy" } } rows { name { value: "test" } } rows { quad { p_iri { prefix_id: 5 name_id: 55 } o_iri { prefix_id: 2 } } } rows { name { value: "plan" } } rows { name { value: "hadPlan" } } rows { prefix { id: 9 value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/" } } rows { name { value: "README.md" } } rows { quad { s_iri { } p_iri { prefix_id: 5 } o_iri { prefix_id: 9 } } } rows { name { value: "Activity" } } rows { quad { s_iri { prefix_id: 2 name_id: 56 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 60 } } } rows { name { value: "qualifiedAssociation" } } rows { quad { p_iri { } o_iri { prefix_id: 2 name_id: 57 } } } rows { name { value: "wasAssociatedWith" } } rows { quad { p_iri { prefix_id: 5 name_id: 62 } o_iri { prefix_id: 13 name_id: 20 } } } rows { prefix { id: 16 value: "https://w3id.org/np/" } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 16 name_id: 1 } p_iri { prefix_id: 7 name_id: 63 } o_literal { lex: "2026-11-08T16:24:31.757Z" datatype: 3 } g_iri { prefix_id: 2 name_id: 9 } } } rows { name { value: "creator" } } rows { quad { p_iri { prefix_id: 7 name_id: 64 } o_iri { prefix_id: 3 name_id: 50 } } } rows { prefix { id: 6 value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 7 name_id: 39 } o_iri { prefix_id: 6 name_id: 2 } } } rows { prefix { id: 14 value: "http://purl.org/nanopub/x/" } } rows { name { value: "hasNanopubType" } } rows { quad { p_iri { prefix_id: 14 name_id: 65 } o_iri { prefix_id: 10 name_id: 14 } } } rows { name { value: "introduces" } } rows { prefix { id: 8 value: "https://w3id.org/delphi/resource/assessment/" } } rows { quad { p_iri { prefix_id: 14 name_id: 66 } o_iri { prefix_id: 8 name_id: 12 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Claim test of aristotle-ha04-11: inconclusive, confidence 0.72" } } } rows { name { value: "domain" } } rows { prefix { id: 1 value: "https://w3id.org/delphi/resource/domain/" } } rows { name { value: "aristotle-biology" } } rows { quad { p_iri { prefix_id: 10 name_id: 67 } o_iri { prefix_id: 1 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 2 } p_iri { prefix_id: 14 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "KFdzUmf/ydVFk7S6RzE3ryWBXciPx9G1pcTwN0eSTkTcK7zWf/u88NRW38Z9nt40zAcTqS3PgQzoINVHx8VRKDWhZgXHA6RreYkE3fCPJk3n90Rt2jQxSk06BoPvPlia3in67gNAdSbaGu4bAc8uheKSYWuatmzOz+DkDoVkV7EcVWm4oqN2xHbDxhwpMhH/+nKg01BYOlJUDrjF4XJTJ5phApdRTipVuqHAobwPZGxPhfUc73OMbScWkuHh8Qtqms6tS6yM3bhCy3nU4GLXO0BSE8jNt6m8ccmOZWxNRZvDhg83xynqgO5uBgymzD7D602Uo9jdDMolwiTeHc08sQ==" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 16 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 14 name_id: 74 } o_iri { prefix_id: 3 name_id: 50 } } }