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Each binomial was matched to class Elasmobranchii. A species with any Egg-laying row counts as egg-laying. The pre-registered thresholds were applied to that count. The D file\'s nutrition modes were counted and not used for the verdict. Headers seen: parity species, mode; D file species, mode." } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Assessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Measured: 0.443 proportion of matched elasmobranch species coded egg-laying (n = 772). Interpretation: The quote says dogfish and the other selachians are internally oviparous and externally viviparous: eggs are produced inside and the young are born. Live-bearing is that parity. Egg-laying is the contrary, whether or not the egg is a horny case. The scope includes rays as well as sharks. Placental and yolk-only live-bearing are both live birth, so both meet the parity reading. The test does not decide which form of nourishment the embryo uses." } } } rows { name { value: "label" } } rows { quad { p_iri { } o_literal { lex: "Claim test of aristotle-ha03-04: refutes, confidence 0.83" } } } rows { name { value: "seeAlso" } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha03-04/" } } rows { name { value: "result.json" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-claim-tester-grok-4-7" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 13 } } } rows { name { value: "admissibleDatasets" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "A public species-level parity table for sharks and rays, corrected to live-bearing versus egg-laying, matched to FishBase so the scope can include both sharks and rays. The table must have been compiled from the reproductive literature, not from Aristotle." } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { } o_literal { lex: "claim-test/0.1.0" } } } rows { name { value: "dataKind" } } rows { quad { p_iri { } o_literal { lex: "biological" } } } rows { name { value: "disconfirmingObservation" } } rows { quad { p_iri { } o_literal { lex: "A substantial number of sharks, dogfish, or rays are coded egg-laying, so the egg does not turn into a young inside the mother before birth." } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "A Sharkipedia search snippet showed an oviparous catshark and several viviparous sharks. That snippet is not this dataset and was not counted." } } } rows { quad { o_literal { lex: "After the run, 186 Dryad binomials did not match a FishBase Elasmobranchii species. The unmatched sample includes chimaeras, which are outside that class, and names FishBase spells differently. They are excluded from the proportion. The 342 matched egg-laying species are the verdict count." } } } rows { quad { o_literal { lex: "Dogfish genera are not a separate verdict. Their modes will be listed after the run." } } } rows { quad { o_literal { lex: "Only the Dryad file description was read before registration. It says shark_modepruned_F_parity.csv codes Live-bearing and Egg-laying. No species row was read." } } } rows { name { value: "expectedObservation" } } rows { quad { p_iri { } o_literal { lex: "Every matched selachian with a parity code is live-bearing, meaning the young leave the mother rather than an egg being laid." } } } rows { name { value: "failCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered. Refutes if at least 10 matched species are Egg-laying, or if the egg-laying proportion is at least 0.10 among at least 30 matched species. Mixed if the egg-laying count is from 1 to 9 and the proportion is below 0.10. Inconclusive with reason underpowered if fewer than 30 species match with a non-empty mode. Inconclusive with reason data-unavailable if the file cannot be retrieved or the mode labels are not Live-bearing and Egg-laying. shark_modepruned_D.csv may be tabulated by mode as a description and does not change the verdict." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.83" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "aristotle-ha03-04--claim-test--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 14 } } } rows { name { value: "aristotle-ha03-04--claim-test--dataset-2" } } rows { quad { o_iri { } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "refutes" } } } rows { name { value: "hypothesis" } } rows { quad { p_iri { } o_literal { lex: "If the claim holds, dogfish and the other selachians give birth to young rather than laying eggs, with development completed inside the mother." } } } rows { name { value: "inferenceMethod" } } rows { quad { p_iri { } o_literal { lex: "Count and proportion of matched Elasmobranchii coded Egg-laying in shark_modepruned_F_parity.csv. Zero egg-layers and at least 50 species supports. Ten or more egg-layers, or a proportion of at least 0.10, refutes. The finer nutrition codes in the D file are descriptive." } } } rows { name { value: "passCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered (supports). Primary table: Hughes and Blackburn Dryad file shark_modepruned_F_parity.csv (doi:10.5061/dryad.80gb5mm12), column mode, categories Live-bearing and Egg-laying as named in the deposit\'s file description. Selachians are binomials matching FishBase v25.04 species in class Elasmobranchii, sharks and rays together, which is the claim\'s scope. Supports only if at least 50 matched species have a non-empty mode and the number coded Egg-laying is 0." } } } rows { name { value: "preregistered" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#boolean" } } rows { quad { p_iri { } o_literal { lex: "false" datatype: 2 } } } rows { prefix { value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "aristotle-ha03-04" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 15 } p_iri { prefix_id: 10 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { s_iri { prefix_id: 14 name_id: 30 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "parity (live-bearing versus egg-laying) for the verdict; finer modes in the D file are descriptive" } } } rows { name { value: "license" } } rows { quad { p_iri { name_id: 39 } o_literal { lex: "CC0 1.0" } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 40 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: Hughes and Blackburn 2025 reanalysis of Katona et al. 2023 chondrichthyan reproductive modes" } } } rows { name { value: "atLocation" } } rows { prefix { value: "https://datadryad.org/downloads/file_stream/" } } rows { name { value: "3901770" } } rows { quad { p_iri { prefix_id: 5 name_id: 41 } o_iri { prefix_id: 16 } } } rows { name { value: "3901775" } } rows { quad { o_iri { } } } rows { name { value: "wasDerivedFrom" } } rows { prefix { id: 6 value: "https://datadryad.org/dataset/doi:10.5061/" } } rows { name { value: "dryad.80gb5mm12" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 6 } } } rows { name { value: "hasChecksum" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "sha256:bb32d5be6070379d3e44db08d58eb1d6f30a64a4ed7a7b89c4afe26b65d8a872" } } } rows { quad { o_literal { lex: "sha256:d74e0becf3782bb68a112c8f45eaf75c1b8acd21d631bdea485046bff15af3cf" } } } rows { quad { s_iri { prefix_id: 14 name_id: 31 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "match binomials to Elasmobranchii, including rays" } } } rows { quad { p_iri { name_id: 39 } o_literal { lex: "CC BY-NC 4.0" } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 40 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: FishBase v25.04 species, families, and orders" } } } rows { prefix { id: 8 value: "https://huggingface.co/datasets/cboettig/fishbase/resolve/main/data/fb/v25.04/parquet/" } } rows { name { value: "families.parquet" } } rows { quad { p_iri { prefix_id: 5 name_id: 41 } o_iri { prefix_id: 8 name_id: 47 } } } rows { name { value: "orders.parquet" } } rows { quad { o_iri { } } } rows { name { value: "species.parquet" } } rows { quad { o_iri { } } } rows { prefix { id: 1 value: "https://huggingface.co/datasets/cboettig/" } } rows { name { value: "fishbase" } } rows { quad { p_iri { prefix_id: 5 name_id: 44 } o_iri { prefix_id: 1 name_id: 50 } } } rows { quad { p_iri { prefix_id: 10 name_id: 46 } o_literal { lex: "sha256:02bfae694deed266250e58ecebf4b10af595178944c431612e865cb37dc563e4" } } } rows { quad { o_literal { lex: "sha256:3f09bbb09c1c10219277f35b4f8c42aebedd5f1b8e00ebdfdeb0e16574b0e090" } } } rows { quad { o_literal { lex: "sha256:a0f33b60ffbc1950ae8b57f652fd0b327f7d00713602c0f4e847ca1d8c8f69a0" } } } rows { name { value: "SoftwareAgent" } } rows { quad { s_iri { prefix_id: 13 name_id: 20 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 51 } g_iri { prefix_id: 2 name_id: 7 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "delphisci claim tester (grok-4.7; 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