Nanopublication

< Home

ID

https://w3id.org/np/RAVVW9UTts_25q3cWn4oXBnjVR_P7IbbhjyXWHhpszRDs

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RAVVW9UTts_25q3cWn4oXBnjVR_P7IbbhjyXWHhpszRDs> .
@prefix sub: <https://w3id.org/np/RAVVW9UTts_25q3cWn4oXBnjVR_P7IbbhjyXWHhpszRDs/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/assessment/turing-topology-genericity--claim-test--overnight-turing-n4>
    a <https://w3id.org/delphi/ontology/Assessment>;
    dc:description "Seed 470003 was fixed before execution. Because no n=3 census existed in the repository, all 3^9 sign patterns and all seven non-empty diffusion supports were first searched with 200 draws per pattern-support pair. Nonzero reaction magnitudes and positive diffusion coefficients were sampled log-uniformly on [0.01, 100], and 121 wave numbers were swept logarithmically on [0.001, 1000]. Then 2,000 distinct n=4 sign patterns were sampled uniformly conditional on a directed cycle, one non-empty support was sampled uniformly for each, and 100 parameter draws were tested. Strict cubic and quartic Routh-Hurwitz inequalities defined stability; capability required stable J and non-Hurwitz J-k^2D at some tested k > 0.";
    <http://www.w3.org/2000/01/rdf-schema#comment> "Measured: 0.196 detected-capable fraction (n = 2000, exact two-sided Clopper-Pearson 95% interval [0.1788079205547995, 0.21408794619692778]). Interpretation: This operationalizes topology capability as detection within fixed bounded rate, diffusion, and wave-number searches. It directly tests the stated Monte Carlo approach, but non-detection is not a proof that no parameters exist.";
    <http://www.w3.org/2000/01/rdf-schema#label> "Claim test of turing-topology-genericity (overnight-turing-n4): refutes, confidence 0.95";
    <http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/math-bio-claims/turing-topology-genericity/overnight-turing-n4/result.json>;
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-gpt-5-6-sol>;
    <https://w3id.org/delphi/ontology/admissibleDatasets> "No external dataset; only seeded computational output from the enumerated n=3 and sampled n=4 sign-pattern ensembles.";
    <https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
    <https://w3id.org/delphi/ontology/dataKind> "computational";
    <https://w3id.org/delphi/ontology/disconfirmingObservation> "The exact 95% binomial interval for the detected-capable fraction lies entirely below 0.9.";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "A finite random parameter search has false negatives for existential capability; consequently this result does not settle or rigorously refute the mathematical conjecture that parameters exist for almost all cyclic topologies.",
      "The exact interval lies far below 0.9 and therefore refutes the pre-registered operational n=4 detection claim.",
      "The n=3 baseline exhausts sign patterns and diffusion supports but not the continuous parameter domain, so it is not the interval-certified exact census proposed in the approach file.",
      "The sample can refute the threshold under this fixed procedure but cannot prove 'almost all'; even a detected fraction above 0.9 would only support, not prove, the claim.";
    <https://w3id.org/delphi/ontology/expectedObservation> "More than 90% of sampled cyclic n=4 sign patterns are detected as Turing-capable by the fixed finite parameter and wave-number search.";
    <https://w3id.org/delphi/ontology/failCriterion> "A two-sided exact Clopper-Pearson 95% interval for the detected Turing-capable fraction lying entirely below 0.9 refutes the pre-registered n=4 operational claim.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.95"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> rdf:nil;
    <https://w3id.org/delphi/ontology/hasVerdict> "refutes";
    <https://w3id.org/delphi/ontology/hypothesis> "Among uniformly sampled four-species interaction sign patterns whose directed interaction graph contains at least one feedback cycle, more than 90% are detected as admitting a diffusion-driven linear instability for at least one of 100 sampled parameter realizations and one non-empty diffusion support.";
    <https://w3id.org/delphi/ontology/inferenceMethod> "Count a topology once any sampled stable Jacobian becomes non-Hurwitz after diagonal diffusion at a tested positive wave number; apply a two-sided 95% Clopper-Pearson interval to the n=4 detected-capable count.";
    <https://w3id.org/delphi/ontology/passCriterion> "A detected Turing-capable fraction greater than 0.9 supports the operational 'almost all' claim; because this is a finite Monte Carlo parameter search, it cannot prove the existential topological claim.";
    <https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
  
  <https://w3id.org/delphi/resource/claim/turing-topology-genericity> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/turing-topology-genericity--claim-test--overnight-turing-n4> .
}

sub:provenance {
  <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-gpt-5-6-sol> a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (gpt-5.6-sol; turing-capable-network-topologies--grok-4-7--3)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gpt-5-6-sol> .
  
  <https://w3id.org/delphi/resource/model/gpt-5-6-sol> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gpt-5.6-sol" .
  
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-gpt-5-6-sol>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/math-bio-claims/turing-topology-genericity/overnight-turing-n4/result.json>;
    prov:wasGeneratedBy sub:test .
  
  sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
  
  sub:test a prov:Activity;
    prov:qualifiedAssociation sub:plan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-gpt-5-6-sol> .
}

sub:pubinfo {
  this: dc:created "2026-11-08T16:24:31.887Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/turing-topology-genericity--claim-test--overnight-turing-n4>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Claim test of turing-topology-genericity (overnight-turing-n4): refutes, confidence 0.95";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/math-bio-claims> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "Z8REVArNNjI4w/xNvWMbnGc8BMSpkWTd4BVo1qz8oejT8r4P4wyI/Xxa3+Dmm1mu2QAeEnvJu8cHQDYFOk9g20km5qhVnoUYxrzXppkfrCPcJ49div1KYx6Qs97sEgNkX6aXXBCR7B0gY02Z+NHskkUY+nHsnSbvRK9zP4nO5PDgW6dWOxzDoSVANNiQuU5Lhd7emNbApztgfPVaxkE2K96ny3A03MMH+VGtgHQ2vHOh7BfZXq5idDL+xdXLh4YN53kyVtzqQTeHwaFstrAwa5ncmeRXB7boADU+w2hYt6OdksEPvqqqQH3+eoLRoxO9eymgb8IavE4WBPFHB4qhnw==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}