https://w3id.org/np/RAV668t-pyw8N9QhNCNulKH1ZRGpUu6hnRGe4Su_VvkpM
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAV668t-pyw8N9QhNCNulKH1ZRGpUu6hnRGe4Su_VvkpM> .
@prefix sub: <https://w3id.org/np/RAV668t-pyw8N9QhNCNulKH1ZRGpUu6hnRGe4Su_VvkpM/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<https://w3id.org/delphi/resource/assessment/aristotle-ga01-20--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "analysis.py read every column name in AnAge Build 15 and PanTHERIA 1.0 and matched them to the pre-registered patterns for acquired mutilation, amputation, docking and acquired injury. It also searched the FishBase SPECIES manual and the reproduction and morphology index pages. No column matched. Litter-size and birth-weight columns matched nearby patterns and were not scored. No parent–offspring fraction was computed.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: 0 columns matching the pre-registered variable (n = 86). Interpretation: Quote: 'And the young of mutilated parents are not always mutilated, just as they are not always like their parents.' Only the mutilation clause is scored. The likeness clause is an analogy in the same sentence; a general resemblance column does not stand in for mutilation. 'Mutilated' is an acquired injury, not a birth defect.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ga01-20: inconclusive, confidence 0.86";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga01-20/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "A public table, among AnAge, FishBase, PanTHERIA, AVONET, GBIF, NCBI, WoRMS, PBDB, or a checksummed paper supplement, with one row per parent–offspring pair (or an explicit pair id), a field the codebook calls an acquired mutilation or amputation, and a field for the offspring's state of the same structure. Licence must be stated. Wikipedia is not admissible. A nearby life-history column is not admissible.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "none";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "Every offspring in such a table shows the parent's acquired mutilation. If no table records both fields, nothing can confirm or refute the clause.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "No table of parent–offspring pairs with an acquired mutilation was obtained, so the claim is not confirmed and not refuted.",
"The FishBase pages do not state a licence. The PanTHERIA file does not state a licence in its opening text.",
"Zero columns match the named variable. The nearby columns, which the pre-registration excludes, are litter or clutch size, litters per year, inter-litter interval and birth weight.";
<https://w3id.org/delphi/ontology/expectedObservation> "Among at least 10 parent–offspring pairs with an acquired parental mutilation and a recorded offspring phenotype for that part, at least one offspring does not show the mutilation.";
<https://w3id.org/delphi/ontology/failCriterion> "Pre-registered. With n >= 10 pairs, the claim is refuted if every offspring shows the parent's acquired mutilation. If 1 <= n < 10, the verdict is inconclusive (underpowered). If no fetched table has both the acquired-mutilation field and the offspring-phenotype field, the verdict is inconclusive with reason data-unavailable. A column for congenital malformation, heritability, or general parent–offspring resemblance is not the named variable and is not used.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.86"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-ga01-20--claim-test--dataset-1>,
<https://w3id.org/delphi/resource/evidence/aristotle-ga01-20--claim-test--dataset-2>,
<https://w3id.org/delphi/resource/evidence/aristotle-ga01-20--claim-test--dataset-3>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "If the young of mutilated parents are not always mutilated, then in a table of parent–offspring pairs the offspring will lack the parent's acquired mutilation in at least one pair.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Fraction of pairs in which the offspring expresses the parental acquired mutilation. Support if the fraction is below 1 at n >= 10; refutation if the fraction equals 1 at n >= 10; underpowered below 10; data-unavailable if the columns are absent. No substitution of congenital or genetic traits.";
<https://w3id.org/delphi/ontology/passCriterion> "Pre-registered. The table must record, for the same parent–offspring pair and the same body part, an acquired parental mutilation (amputation, docking, or other injury the codebook marks as acquired rather than congenital or genetic) and the offspring's phenotype for that part. With n >= 10 such pairs, the claim is supported if the number of offspring who show the parental mutilation is strictly less than n (not always).";
<https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
<https://w3id.org/delphi/resource/claim/aristotle-ga01-20> <https://w3id.org/delphi/ontology/hasAssessment>
<https://w3id.org/delphi/resource/assessment/aristotle-ga01-20--claim-test> .
<https://w3id.org/delphi/resource/evidence/aristotle-ga01-20--claim-test--dataset-1>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "Column names checked against the pre-registered variable";
dc:license "CC BY 3.0. The fetched page https://genomics.senescence.info/legal.html says this work is licensed under a Creative Commons Attribution 3.0 Unported License, that the data sheets, including the observations in AnAge, are copyrighted, and that most content in HAGR is in the public domain.";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: AnAge, the Animal Ageing and Longevity Database";
prov:atLocation <https://genomics.senescence.info/legal.html>, <https://genomics.senescence.info/species/>,
<https://genomics.senescence.info/species/dataset.zip>;
prov:wasDerivedFrom <https://genomics.senescence.info/species/>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:708d25e725b8cb3625e0a5c03062bbb044985bea283af2d14433739dea9f8690",
"sha256:833190daa11a177ef557c70c70a746eab797303f775e168f64ad1ca72f623d05", "sha256:e3ddb66e32e973a79932859ba53013e8f60d957c6ec01c6eb573e3ea3018d630" .
<https://w3id.org/delphi/resource/evidence/aristotle-ga01-20--claim-test--dataset-2>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "Column names checked against the pre-registered variable";
dc:license "Not stated. The first 8000 characters of the retrieved file contain no license, copyright, or Creative Commons string.";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: PanTHERIA 1.0 WR05 ecological trait table";
prov:atLocation <https://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt>;
prov:wasDerivedFrom <https://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:36e64314cae0394a966a63b949504d1975ac5c5629e05e36c1b139b3348f044a" .
<https://w3id.org/delphi/resource/evidence/aristotle-ga01-20--claim-test--dataset-3>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "Codebook searched for the pre-registered variable; not a species-score table";
dc:license "Not stated on the fetched FishBase manual pages.";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: FishBase table manuals";
prov:atLocation <https://www.fishbase.se/manual/English/FishBaseThe_SPECIES_Table.htm>,
<https://www.fishbase.se/manual/English/fishbasemorphology_and_physiology.htm>, <https://www.fishbase.se/manual/English/fishbasereproduction00002700.htm>;
prov:wasDerivedFrom <https://www.fishbase.se/manual/English/FishBaseThe_SPECIES_Table.htm>;
<https://w3id.org/delphi/ontology/hasChecksum> "sha256:2651a55498191d537a5afad930173accefe828c06bb4028a51c66bbe2ccb6813",
"sha256:4a250f19b12ce0cd384ab3648734831e1fd969a03894ce2d5c04137149bda4c5", "sha256:93ffbf8da39335434b66a4657e0e06d9ca7fcc3fe0206478fbbac27b4cc07687" .
}
sub:provenance {
<https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (grok-4.7; cursor/aristotle-life-history-i-b0f1)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "grok-4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga01-20/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
prov:qualifiedAssociation sub:plan;
prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}
sub:pubinfo {
this: dc:created "2026-11-08T16:24:31.728Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-ga01-20--claim-test>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ga01-20: inconclusive, confidence 0.86";
<https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
npx:hasSignature "pLWF0ABDVR1oascYzRQMkJT3/5b4Ny27VA9NgLGpPbCdLrXxWy+0uo9aGCF4QZv8jmfvwc9f3szb9Ybk/xOicKb4i5ZhkZxwVWCVH4qX3P0Ul1wv9DjLR7V5NSGejtkzz5bLLIKv54Px1FWMRnjdC6pJYS0pg0dG211XoZyOMpQsG3/HDkSqQYLi3fhYCTxYWCJ28IgzwPhSSqLSTYEBCmlV3MIgl/oWungWquLN5gE20AIcMgp2b4nsFp9HpnaoLNTVvSbqjOeLLDtl/LQZs8SVAYrzFaXoEBi7fC1eRp/o0IKP0MVn6vwfJr66uthoKEeJWol0vUEvDZJVMMzI3A==";
npx:hasSignatureTarget this:;
npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}