@prefix this: <https://w3id.org/np/RATNRFuoDQQYD_xmCZlOvKLEUncd4BPzIp7im8WWx-OCA> .
@prefix sub: <https://w3id.org/np/RATNRFuoDQQYD_xmCZlOvKLEUncd4BPzIp7im8WWx-OCA/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
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    dc:description "The full text gives a detailed enough model description for a computational audit, although exact tabulated parameters and original inputs may still be needed for identity with the reported implementation. Public literature can constrain portions of the force law, but no single open dataset appears to cover the complete parameter bundle. The model can therefore be checked in part, not comprehensively validated as stated.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Implement the stated bead spacing, mass, piecewise force law, bending interaction, mesh, rupture force, and time step, then test numerical stability and compare its force-extension curve with public experimental or atomistic benchmarks. Agreement at the unfolding plateau and rupture regime would support the parameterization; systematic disagreement or timestep-dependent behavior would refute it.";
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    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Public single-molecule benchmarks are scattered and may use different proteins and loading rates.",
      "Several quantities are model choices rather than independent empirical predictions.",
      "The original LAMMPS implementation is available only on request.";
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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    <https://w3id.org/delphi/ontology/hasScore> "0.62"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-10--gpt--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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  <https://w3id.org/delphi/resource/claim/buehler-2009-helical-networks-10> <https://w3id.org/delphi/ontology/hasAssessment>
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      <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-10--gpt--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2009-helical-networks-10--gpt--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "open software for reconstructing and checking the coarse-grained model";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: LAMMPS";
    prov:wasDerivedFrom <https://www.lammps.org/> .
  
  <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gpt-5.6-sol-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol" .
}

sub:provenance {
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    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-3.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
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      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
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    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2009-helical-networks-10--gpt>;
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