. . . . . . "2026-03-13T14:12:26.057777+00:00"^^ . . . . "1"^^ . "-R '@RG\\tID:{sample}\\tSM:{sample}'" . . "2"^^ . "samtools" . . "3"^^ . "coordinate" . . "4"^^ . "" . . "1"^^ . "" . . "all" . "all" . . "calls/all.vcf" . "envs/bcftools.yml" . "shell" . "bcftools_call" . . "sorted_reads/A.bam" . "sorted_reads/B.bam" . "sorted_reads/{sample}.bam" . . . . . "envs/bwa.yml" . "v8.1.1/bio/bwa/mem" . "[\"-R '@RG\\\\tID:{sample}\\\\tSM:{sample}'\", \"samtools\", \"coordinate\", \"\"]" . "bwa_mem" . . "calls/positions.png" . "envs/matplotlib.yml" . "scripts/plot-positions.py" . "plot_positions" . . "calls/quals.png" . "envs/matplotlib.yml" . "scripts/plot-quals.py" . "plot_quals" . . "sorted_reads/A.bam.bai" . "sorted_reads/B.bam.bai" . "sorted_reads/{sample}.bam.bai" . . "envs/samtools.yml" . "v5.7.0/bio/samtools/index" . "[\"\"]" . "samtools_index" . . "{\"samples\": {\"A\": \"data/samples/A.fastq\", \"B\": \"data/samples/B.fastq\"}}" . "config/config.yaml" . "Snakefile" . "config/config.yaml" . "envs/bcftools.yml" . "envs/bwa.yml" . "envs/matplotlib.yml" . "envs/samtools.yml" . "scripts/plot-positions.py" . "scripts/plot-quals.py" . "" . . . . . . . "/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile" . "/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile" . "{}" . . "8"^^ . "2"^^ . "6"^^ . "2026-03-13T15:12:26.101740"^^ . . "2026-03-13T15:12:26.101740"^^ . . "RSA" . "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkOFUnnRCp/k9/0ugvx8zQJ+Qc675W1Ug6F839+xvJ2QsSBu4iOJ1O2kJCmb3tALp3gJOt8sffRot3VrfY1hbgXxL7BVtDsfHHmXVff4YCeg5Ycdn5cDpLawDpAdYwMhK0LwIkZ3fwH9/o9JniYKXLV/jpF9bMKyiw/6tqlCHaMW1r8gzZzoxVIAakwvlABoY0iNoToLTlBRXEI4mLUNjDMnMwQgfh1KXMxMruNjW3wJyeDEIfa2ooAt0E4CRM9pkrEb37NzD9Jz8aSUFFY6BvIxF4ixK7rm6IUDvQ76LqXkEmgSeRv1kw7gnCe9wV/wHd0ZeW4heoBXmLHX3MvHfjwIDAQAB" . "QmEtkeOAbWzHunHlJ5PFkTYy828gJiPnXO1McKq4Hxg8ZWKgD6ihLjobB3G7jhKS62UbE9te15AttqBzbEWOENebgmidcT6iShSLRrTCuAl57ydsYLePUuli2FNn1VXzrh05rUTJsPeq9qfat1a+NcsVoGpAfPz+aPF9z9OO9r6l6yDatc6N+796SDffSOZVBJM0P28v/SQY+DJPL7L4ZFtibHOmXW2K8CkvZhUMUjkH94xaKueHNqn+cLyWTJfAO8J7aD/t1Gk7u+96qPweQltO1DgDhRLNaf2QU/5UpXBkOjHYdRifXRfQSC1JB2yfK/eiFdOkvIl/A0kQIvWHgQ==" . . .