@prefix this: <https://w3id.org/np/RARRvGb4NIqNgnpizZQC-ZIqSbyzvIkifTLjXPIV9pTx8> .
@prefix sub: <https://w3id.org/np/RARRvGb4NIqNgnpizZQC-ZIqSbyzvIkifTLjXPIV9pTx8/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
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    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
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sub:assertion {
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    dc:description "Within its stated scope of atomistic simulation, whether hydrogen bonds break one-by-one at fast pulling rates and in clusters of several bonds at slow pulling rates is directly measurable from steered MD coordinate trajectories using standard geometric H-bond definitions. Open MD engines and PDB structures allow a small team to replicate the high- versus low-rate unfolding trajectories within weeks, though only the simulation scope (not direct sub-nanometer experimental bond-tracking) is accessible.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Track backbone hydrogen-bond occupancy vs. time in steered MD trajectories of alpha-helical and beta-sheet structures at high and low pulling speeds, and compute the cluster size distribution of H-bonds breaking within a picosecond window around force peaks.";
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    dc:description "Atomic coordinates for representative alpha-helical and beta-sheet domains used as starting structures";
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    dc:description "Open-source MD engine and H-bond trajectory analysis tools to quantify sequential versus simultaneous bond rupture";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: GROMACS Molecular Dynamics Package";
    prov:wasDerivedFrom <https://www.gromacs.org/> .
  
  <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
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sub:provenance {
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    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
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  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
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