@prefix this: <https://w3id.org/np/RAQ46lU429VW1gx1Y5oT-JnSWNPTNrOHCGVcgtgK6TH8o> .
@prefix sub: <https://w3id.org/np/RAQ46lU429VW1gx1Y5oT-JnSWNPTNrOHCGVcgtgK6TH8o/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
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    a prov:SoftwareAgent;
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    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "The claim can be converted into a structure-to-mechanics prediction, but its causal wording requires matched perturbational or trajectory data. Available structures cover only fragments and do not record shear response. A new controlled simulation or experiment is needed to separate hydrogen bonding and secondary structure from correlated composition and geometry.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Across matched MaSp1/MaSp2 assemblies, quantify crystalline and semi-amorphous secondary structure, hydrogen-bond networks, and shear response, then test whether these features predict mechanics after controlling composition and geometry. Perturbations that alter the features and produce the predicted mechanical changes support control; weak prediction or unchanged mechanics refutes it.";
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Composition and assembly geometry confound secondary structure and hydrogen bonding.",
      "Public structures lack matched nanoscale shear measurements.", "The term controlled by does not specify the relative contribution of alternative mechanisms.";
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    <https://w3id.org/delphi/ontology/hasVerdict> "needs-new-data" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt--analysis-feasibility>
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  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt--data-adequacy>
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt--data-existence>
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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    <https://w3id.org/delphi/ontology/hasScore> "0.3"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt--discriminating-power>
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.52"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2010-silk-assemblies-02 by GPT-5.6 Sol: 0.7";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
    <https://w3id.org/delphi/ontology/hasScore> "0.7"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2010-silk-assemblies-02> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt--analysis-feasibility>,
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      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-02--gpt--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "partial structural information for silk motifs, without matched shearing trajectories";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
    prov:wasDerivedFrom <https://www.rcsb.org/> .
  
  <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gpt-5.6-sol-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-3.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-02--gpt>;
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    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
  sub:sig npx:hasAlgorithm "RSA";
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    npx:hasSignatureTarget this:;
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}