https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/Head https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/assertion https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/provenance https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/pubinfo https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/assertion https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/config-1 http://purl.org/dc/terms/identifier config.yaml https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/config-1 https://schema.org/text samples: A: data/samples/A.fastq B: data/samples/B.fastq bwa_map: rg: "@RG\\tID:{sample}\\tSM:{sample}" https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/config-2 http://purl.org/dc/terms/identifier config.yaml https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/config-2 https://schema.org/text samples: A: data/samples/A.fastq B: data/samples/B.fastq bwa_map: rg: "@RG\\tID:{sample}\\tSM:{sample}" https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/dataset http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://schema.org/Dataset https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/dataset https://w3id.org/np/snakemake/describesWorkflow RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/dataset https://w3id.org/np/snakemake/generatedAt 2026-06-09T14:21:05.407308+00:00 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/dataset https://w3id.org/np/snakemake/hasConfigurationSection https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-configuration https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/dataset https://w3id.org/np/snakemake/hasRuleSection https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-rules https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-1-bcftools_call http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/snakemake/WorkflowJob https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-1-bcftools_call https://w3id.org/np/snakemake/hasOutput calls/all.vcf https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-1-bcftools_call https://w3id.org/np/snakemake/ruleName bcftools_call https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-2-bwa_mem http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/snakemake/WorkflowJob https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-2-bwa_mem https://w3id.org/np/snakemake/hasOutput sorted_reads/A.bam https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-2-bwa_mem https://w3id.org/np/snakemake/ruleName bwa_mem https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-3-bwa_mem http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/snakemake/WorkflowJob https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-3-bwa_mem https://w3id.org/np/snakemake/hasOutput sorted_reads/B.bam https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-3-bwa_mem https://w3id.org/np/snakemake/ruleName bwa_mem https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-4-plot_positions http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/snakemake/WorkflowJob https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-4-plot_positions https://w3id.org/np/snakemake/hasOutput calls/positions.png https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-4-plot_positions https://w3id.org/np/snakemake/ruleName plot_positions https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-5-plot_quals http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/snakemake/WorkflowJob https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-5-plot_quals https://w3id.org/np/snakemake/hasOutput calls/quals.svg https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-5-plot_quals https://w3id.org/np/snakemake/ruleName plot_quals https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-6-samtools_index http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/snakemake/WorkflowJob https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-6-samtools_index https://w3id.org/np/snakemake/hasOutput sorted_reads/A.bam.bai https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-6-samtools_index https://w3id.org/np/snakemake/ruleName samtools_index https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-7-samtools_index http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/snakemake/WorkflowJob https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-7-samtools_index https://w3id.org/np/snakemake/hasOutput sorted_reads/B.bam.bai https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/job-7-samtools_index https://w3id.org/np/snakemake/ruleName samtools_index https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bcftools_call https://w3id.org/np/snakemake/hasInput data/genome.fa https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bcftools_call https://w3id.org/np/snakemake/hasInput sorted_reads/A.bam https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bcftools_call https://w3id.org/np/snakemake/hasInput sorted_reads/A.bam.bai https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bcftools_call https://w3id.org/np/snakemake/hasInput sorted_reads/B.bam https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bcftools_call https://w3id.org/np/snakemake/hasInput sorted_reads/B.bam.bai https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bcftools_call https://w3id.org/np/snakemake/hasOutput calls/all.vcf https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bwa_mem https://w3id.org/np/snakemake/hasInput data/genome.fa.amb https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bwa_mem https://w3id.org/np/snakemake/hasInput data/genome.fa.ann https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bwa_mem https://w3id.org/np/snakemake/hasInput data/genome.fa.pac https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bwa_mem https://w3id.org/np/snakemake/hasInput data/genome.fa.sa https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bwa_mem https://w3id.org/np/snakemake/hasOutput sorted_reads/{sample}.bam https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bwa_mem https://w3id.org/np/snakemake/hasSoftwarePackage github.com/snakemake/snakemake-wrappers/bio/bwa/mem/environment.yaml@v5.7.0 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-plot_positions https://w3id.org/np/snakemake/hasInput calls/all.vcf https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-plot_positions https://w3id.org/np/snakemake/hasOutput calls/positions.png https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-plot_quals https://w3id.org/np/snakemake/hasInput calls/all.vcf https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-plot_quals https://w3id.org/np/snakemake/hasOutput calls/quals.svg https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-samtools_index https://w3id.org/np/snakemake/hasInput sorted_reads/{sample}.bam https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-samtools_index https://w3id.org/np/snakemake/hasOutput sorted_reads/{sample}.bam.bai https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-samtools_index https://w3id.org/np/snakemake/hasSoftwarePackage github.com/snakemake/snakemake-wrappers/bio/samtools/index/environment.yaml@v5.7.0 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-configuration http://www.w3.org/2000/01/rdf-schema#label from workflow configuration https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-configuration https://w3id.org/np/snakemake/hasConfigurationFile https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/config-1 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-configuration https://w3id.org/np/snakemake/hasConfigurationFile https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/config-2 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-rules http://www.w3.org/2000/01/rdf-schema#label workflow rules https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-rules https://w3id.org/np/snakemake/hasWorkflowRule https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bcftools_call https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-rules https://w3id.org/np/snakemake/hasWorkflowRule https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-bwa_mem https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-rules https://w3id.org/np/snakemake/hasWorkflowRule https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-plot_positions https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-rules https://w3id.org/np/snakemake/hasWorkflowRule https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-plot_quals https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/workflow-rules https://w3id.org/np/snakemake/hasWorkflowRule https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/rule-samtools_index https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/provenance https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/assertion http://www.w3.org/ns/prov#generatedAtTime 2026-06-09T16:21:05.451297+02:00 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/assertion http://www.w3.org/ns/prov#wasAttributedTo https://orcid.org/0000-0003-2408-7588 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/pubinfo https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://purl.org/dc/terms/created 2026-06-09T14:21:05.407308+00:00 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://purl.org/dc/terms/creator https://orcid.org/0000-0003-2408-7588 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://purl.org/nanopub/x/hasNanopubType https://schema.org/Dataset https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://purl.org/nanopub/x/signedBy https://orcid.org/0000-0003-2408-7588 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://www.w3.org/2000/01/rdf-schema#label Snakemake workflow metadata: RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://www.w3.org/ns/prov#generatedAtTime 2026-06-09T16:21:05.451297+02:00 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak http://www.w3.org/ns/prov#wasAttributedTo https://orcid.org/0000-0003-2408-7588 https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/sig http://purl.org/nanopub/x/hasAlgorithm RSA https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/sig http://purl.org/nanopub/x/hasPublicKey MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkOFUnnRCp/k9/0ugvx8zQJ+Qc675W1Ug6F839+xvJ2QsSBu4iOJ1O2kJCmb3tALp3gJOt8sffRot3VrfY1hbgXxL7BVtDsfHHmXVff4YCeg5Ycdn5cDpLawDpAdYwMhK0LwIkZ3fwH9/o9JniYKXLV/jpF9bMKyiw/6tqlCHaMW1r8gzZzoxVIAakwvlABoY0iNoToLTlBRXEI4mLUNjDMnMwQgfh1KXMxMruNjW3wJyeDEIfa2ooAt0E4CRM9pkrEb37NzD9Jz8aSUFFY6BvIxF4ixK7rm6IUDvQ76LqXkEmgSeRv1kw7gnCe9wV/wHd0ZeW4heoBXmLHX3MvHfjwIDAQAB https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/sig http://purl.org/nanopub/x/hasSignature YJi+0JKjA28Qn6TAyXo5peTdT08c/mRJpIYFz4t5qV+VvsZQd1PObuT6iRk0qCWEiFuekLvueibkRkBTags+eJOFHTiaY5hbsUgByOQex0w33uQsDhngH+2W3Y5OjeqPh76ekTuUL4KvHflDY52HZHUGE2zzBC3YgTBVh9Lkl4plAdMWIy9H6znkd3H7tAytady8Qh4EEcxFyXFdqTE9W3+2/FnpzYm2uobsIq7ndt3lK6dJhkmWtzlPmGF5tqJAOJ1B4pU6QAjE7MsZBFgiuvN1IhYuDWABEdXlbhRYvgpt6z7Gs9AMYFuqYNea2gmrNCshj9WpdbLeNHLS6VsGFA== https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/sig http://purl.org/nanopub/x/hasSignatureTarget https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak https://w3id.org/np/RAPaopgiLByaOJf5SMIEVQEYRcfdkeLr0pjYn9J2dk8ak/sig http://purl.org/nanopub/x/signedBy https://orcid.org/0000-0003-2408-7588