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Specimen identifiers are matched case-insensitively, and macOS resource-fork members whose names start with \'._\' are skipped. For each internal chamber mesh (SampleID-CH#.stl, numbered from the final chamber) and the shrink-wrapped whole test (SampleID-WRAP.stl), up to 5000 vertices are sampled and an algebraic sphere is fit. The specimen score is the median normalized RMS residual of the chambers, excluding the earliest, minus the whole-test residual. A one-sided Wilcoxon test across specimens is compared with the pre-registered threshold. The isoperimetric quotient from the measurement table is computed and not used, because the meshes are present." } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Assessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Measured: -0.008931936051936817 median across specimens of (median chamber sphere-fit residual minus whole-test residual); negative means chambers are closer to a sphere (n = 37, one-sided Wilcoxon p (chambers closer to a sphere) = 0.03262675827863859). Interpretation: Thompson\'s \'figure of equilibrium shaped by surface tension\' for a new chamber is read as a spherical segment, the closed surface of constant mean curvature available from a mesh. The comparison is to the whole test, which the same sentence says is not itself a figure of minimal area. Globigerina and Rotalia are the named examples; planktonic foraminifera in the archive are in that class of multichambered shells, and any absence of Rotalia or of desmids is a limit on scope, not a reason to drop the specimens that are present. The moment of solidification is not in a mesh of the finished shell." } } } rows { name { value: "label" } } rows { quad { p_iri { } o_literal { lex: "Claim test of thompson1917-ch05-08: supports, confidence 0.35" } } } rows { name { value: "seeAlso" } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/thompson-growth-form/thompson1917-ch05-08/" } } rows { name { value: "result.json" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-claim-tester-grok-4-7-high-fast" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 13 } } } rows { name { value: "admissibleDatasets" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "Segmented per-chamber surfaces, or per-chamber volume and surface area, for multichambered foraminifera, with a whole-test surface or measurement for the same specimen and a way to tell chambers apart. Public and licensed for reuse. Desmid semicells and live images of chamber formation would be admissible for the clauses this test leaves out; they are not required for the geometric reading." } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { } o_literal { lex: "claim-test/0.1.0" } } } rows { name { value: "dataKind" } } rows { quad { p_iri { } o_literal { lex: "biological" } } } rows { name { value: "disconfirmingObservation" } } rows { quad { p_iri { } o_literal { lex: "Chamber surfaces depart from a sphere by as much as, or by more than, the whole multichambered test." } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "A sphere fit on the finished chamber mesh, including the septal wall, is a geometric comparison. It does not show that surface tension shaped the chamber." } } } rows { quad { o_literal { lex: "Globigerina bulloides, the named genus present in the archive, has median paired difference -0.06252824301103344 (9 of 10 negative). Other genera in the same table are near zero or positive. The verdict uses all 37 specimens, not Globigerina alone." } } } rows { quad { o_literal { lex: "No Rotalia and no desmids are in this archive. The shells are finished calcite. Nothing here records a chamber while it was fluid or the moment it solidified, so the surface-tension mechanism and the fluid-to-rigid timing are untested." } } } rows { quad { o_literal { lex: "Six specimen ids in the chamber table (RS11-5, RS11-6, RS12-1, RS12-3, RS14-3, T1) have no joined shrink-wrap whole-test mesh and are absent from the test. One mesh id has no species label in the chamber table." } } } rows { quad { o_literal { lex: "The isoperimetric quotients from the volume and area table are not the verdict. Some chamber quotients exceed 1, which a closed surface cannot, so those columns are not a clean sphere comparison. Their paired test does not meet the support rule." } } } rows { quad { o_literal { lex: "The sphere-fit difference is small. Median normalized RMS residual is 0.12088461729839131 for chambers and 0.13400139724767005 for the whole test. The median paired difference is -0.008931936051936817 (mean -0.014913645970034601). 23 of 37 specimens have chambers closer to a sphere than the whole test (one-sided Wilcoxon p 0.03262675827863859)." } } } rows { name { value: "expectedObservation" } } rows { quad { p_iri { } o_literal { lex: "Individual chamber surfaces are closer to a fitted sphere than the surface of the whole test from the same specimen." } } } rows { name { value: "failCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered. REFUTES if n_specimens >= 10 and the Wilcoxon test is significant (p < 0.05) in the opposite direction (chambers farther from a sphere than the whole shell). MIXED if one of the majority-sign and the significance requirements holds and the other does not. Inconclusive, reason underpowered, if fewer than 10 specimens can be measured; data-unavailable if neither meshes nor area-and-volume tables can be fetched; not-operationalizable if chamber order or a closed surface cannot be identified. Desmids and the fluid-to-rigid timing are out of scope and are not scored. A sphere fit on a rigid shell does not show that the chamber was a fluid equilibrium when it formed. Thresholds are not revised after the meshes are opened." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.35" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "thompson1917-ch05-08--claim-test--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 14 } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "supports" } } } rows { name { value: "hypothesis" } } rows { quad { p_iri { } o_literal { lex: "Each foraminiferal chamber, once formed, lies closer to a sphere than the whole multichambered shell does." } } } rows { name { value: "inferenceMethod" } } rows { quad { p_iri { } o_literal { lex: "Paired one-sided Wilcoxon test across specimens of the difference between the median chamber sphere-fit residual and the whole-test residual, p < 0.05, n >= 10, with the majority of specimens in the predicted direction. The isoperimetric quotient is the fallback when meshes are not in the archive." } } } rows { name { value: "passCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered geometric reading. For each specimen that has a whole-test mesh and at least one per-chamber mesh with an ontogenetic order, fit a sphere by least squares to the vertices of each chamber mesh and to the whole-test mesh (subsample up to 5000 vertices if a mesh is larger). The residual s is the root-mean-square of |distance to the fitted centre minus radius|, divided by the fitted radius. The specimen value is the median s of its chambers excluding the earliest chamber, minus the whole-test s; negative means the chambers are closer to a sphere than the whole shell. SUPPORTS if n_specimens >= 10, a majority of specimens have a negative value, and a one-sided Wilcoxon signed-rank test of the values against 0 has p < 0.05 in the negative direction. If chamber meshes are absent and the archive instead gives per-chamber surface area and volume, the same test is run on the isoperimetric quotient Q = 36*pi*V^2/A^3, with the sign reversed (chambers should have higher Q than the whole test). Meshes are preferred when both exist. The choice is made from which files the archive contains, not from the sign of the result." } } } rows { name { value: "preregistered" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#boolean" } } rows { quad { p_iri { } o_literal { lex: "false" datatype: 2 } } } rows { prefix { value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "thompson1917-ch05-08" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 15 } p_iri { prefix_id: 10 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { s_iri { prefix_id: 14 name_id: 30 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "per-chamber STL meshes and the shrink-wrapped whole test for planktonic foraminifera, plus the measurement tables used to name species" } } } rows { name { value: "license" } } rows { quad { p_iri { name_id: 38 } o_literal { lex: "CC BY 4.0" } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 39 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: Micro-CT scans, whole-test meshes, and internal chamber segments of planktonic foraminifera" } } } rows { name { value: "atLocation" } } rows { prefix { value: "https://zenodo.org/api/records/2593861/files/Chamber_Measurements.csv/" } } rows { name { value: "content" } } rows { quad { p_iri { prefix_id: 5 name_id: 40 } o_iri { prefix_id: 16 } } } rows { prefix { id: 6 value: "https://zenodo.org/api/records/2593861/files/Meshes.zip/" } } rows { quad { o_iri { prefix_id: 6 name_id: 41 } } } rows { prefix { id: 8 value: "https://zenodo.org/api/records/2593861/files/Sample_Metadata.csv/" } } rows { quad { o_iri { prefix_id: 8 name_id: 41 } } } rows { prefix { id: 1 value: "https://zenodo.org/api/records/2593861/files/Whole_Test_Measurements.csv/" } } rows { quad { o_iri { prefix_id: 1 name_id: 41 } } } rows { name { value: "wasDerivedFrom" } } rows { prefix { id: 3 value: "https://zenodo.org/records/" } } rows { name { value: "2593861" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 3 } } } rows { name { value: "hasChecksum" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "sha256:93ab4296c45d813c3bbe2f5b71c674434a45a72d98feaf71db8820dc6502e996" } } } rows { quad { o_literal { lex: "sha256:a939b1412a4ae9060e608ec05d2f2f0a8b224010c7d86f397a4cc4ad47bb1f7e" } } } rows { quad { o_literal { lex: "sha256:c749ca03a41d0c7d8affec21c188818eb58f21837eb9eee94c757f985f37f2cb" } } } rows { quad { o_literal { lex: "sha256:daa5cb899b8346652d1ad3e75dbff9945abab677d9c950ef4eeede4ae796b683" } } } rows { name { value: "SoftwareAgent" } } rows { quad { s_iri { prefix_id: 13 name_id: 20 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 45 } g_iri { prefix_id: 2 name_id: 7 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "delphisci claim tester (grok-4.7-high-fast; 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