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ID

https://w3id.org/np/RAOPgulQYDi4oALeG3eNT5VVQaqRu6WZJg9kn2QCrmxfw

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RAOPgulQYDi4oALeG3eNT5VVQaqRu6WZJg9kn2QCrmxfw> .
@prefix sub: <https://w3id.org/np/RAOPgulQYDi4oALeG3eNT5VVQaqRu6WZJg9kn2QCrmxfw/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/assessment/aristotle-ha06-22--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
    dc:description "Downloaded LakeTroutEggHatchData.csv and checked md5 and size against ScienceBase. The header has no column matching the preregistered unexposed-arm pattern. Unfertilized_Removed, dead, hatched, and larval-mortality columns were pre-registered as counts inside inseminated lots, so those counts were not summed.";
    <http://www.w3.org/2000/01/rdf-schema#comment> "Measured: null hatch count in a no-milt arm (n = 1112). Interpretation: The sentence says the female lays eggs, the male sheds milt over them, and only the sprinkled eggs produce young. Fertilization mode (external versus internal) does not measure that contrast. The USGS lake-trout release is the public incubation file whose metadata lists an Unfertilized column; the preregistered rule is that this column is eggs removed from inseminated lots, not a no-milt control, unless a separate unexposed column is actually present.";
    <http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha06-22: inconclusive, confidence 0.7";
    <http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha06-22/result.json>;
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
    <https://w3id.org/delphi/ontology/admissibleDatasets> "An openly downloadable incubation table for an oviparous fish with a milt-exposed arm and an arm that received no milt, and counts of eggs and of hatched or developed young. Counts of unfertilized eggs inside a lot that was inseminated are not that contrast.";
    <https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
    <https://w3id.org/delphi/ontology/dataKind> "none";
    <https://w3id.org/delphi/ontology/disconfirmingObservation> "Eggs never exposed to milt hatch or develop at a rate comparable to exposed eggs.";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Dryad fertilization tables located while choosing a file (Chinook salmon cortisol, zebrafish paternal starvation, heatwave paternal effects) describe unfertilized counts inside inseminated clutches. They were not downloaded and are not a second test.",
      "ScienceBase attribute definitions, read as the data dictionary and not as the counts, describe Unfertilized_Removed as eggs that were not fertilized and removed, Hatched as eggs that were fertilized and hatched, and the abstract says gametes were fertilized in the field. Those definitions are why an Unfertilized column was excluded in advance.";
    <https://w3id.org/delphi/ontology/expectedObservation> "Eggs of an oviparous fish that were not exposed to milt do not hatch or develop, while eggs from the same design that were exposed do.";
    <https://w3id.org/delphi/ontology/failCriterion> "Pre-registered. The claim is refuted if that same contrast exists and the unexposed group produces young at a rate at least half the exposed group's rate, with at least 20 eggs in each group. Confidence 0.75. A column named Unfertilized, or defined as eggs inside an inseminated lot that did not fertilize, is not an unexposed arm. If the file has no unexposed arm, the verdict is inconclusive with reason data-unavailable and confidence 0.70, and hatch counts are not summed. If the provider md5 does not match, the verdict is inconclusive with reason data-unavailable and confidence 0.40.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.7"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/aristotle-ha06-22--claim-test--dataset-1>;
    <https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
    <https://w3id.org/delphi/ontology/hypothesis> "If only fish eggs that have been sprinkled with milt produce young, a public egg-incubation table for an oviparous fish will show development or hatching in a milt-exposed group and none in a group that was not exposed to milt.";
    <https://w3id.org/delphi/ontology/inferenceMethod> "Require a column whose name matches the unexposed pattern in rules. If it is absent, stop without summing hatch columns and record data-unavailable. If it is present, compare hatch or development counts to the thresholds in pass_criterion and fail_criterion.";
    <https://w3id.org/delphi/ontology/passCriterion> "Pre-registered. The file supports the claim if it has a column or factor that separates eggs exposed to milt or sperm from eggs not exposed, the unexposed group's hatch or developed-embryo count is 0, the exposed group's hatch or developed-embryo count is at least 1, and the unexposed group has at least 20 eggs. Confidence 0.75.";
    <https://w3id.org/delphi/ontology/preregistered> "false"^^xsd:boolean .
  
  <https://w3id.org/delphi/resource/claim/aristotle-ha06-22> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/aristotle-ha06-22--claim-test> .
  
  <https://w3id.org/delphi/resource/evidence/aristotle-ha06-22--claim-test--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "incubation counts checked for a no-milt arm";
    dc:license "";
    <http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Lake trout hatch rates, Northern Refuge, Lake Michigan, 2019";
    prov:atLocation <https://www.sciencebase.gov/catalog/file/get/61d5ac1dd34ed79293ffa314?f=__disk__c3%2Fdc%2F87%2Fc3dc87f97fb144987214e5a7cb48c089f70f1af5>;
    prov:wasDerivedFrom <https://www.sciencebase.gov/catalog/item/61d5ac1dd34ed79293ffa314>;
    <https://w3id.org/delphi/ontology/hasChecksum> "sha256:fa7082a0b9ae26f49d9cd98ca371848458649771fbccaf3335bc01dede979e5c" .
}

sub:provenance {
  <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (grok-4.7; bc-37abdfd5-2c7d-45b6-8f26-227da55194a4)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
  
  <https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "grok-4.7" .
  
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha06-22/result.json>;
    prov:wasGeneratedBy sub:test .
  
  sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
  
  sub:test a prov:Activity;
    prov:qualifiedAssociation sub:plan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> .
}

sub:pubinfo {
  this: dc:created "2026-11-08T16:24:31.772Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/Assessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/aristotle-ha06-22--claim-test>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Claim test of aristotle-ha06-22: inconclusive, confidence 0.7";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/aristotle-biology> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "UqM0+KNsExpbRyWyNkg2O5KAzAAAcLTmjlA6b9DG6We5GshDhQh9o6K8F7KQSF1ogli27y4uKzSSAFo1GL4a7iXndsqGbsaEdzwphb6hPL3gDAgBKbCpxvDX8wJu9kZn5VEECyOUXybsjrqkSh5xe/LrQLnmsky4zKDx0uiRfkZAMwt+OI+tZD6I9sZu/BS8n2ocda8mBMg8pLGMtHvUZR2X5gsE767PyX/oIdRixrlPlWbF+4GL56oSNy+m1apnQ9k1xK8nSO5JVIGzx+noy2bfa5AcvuBzbGFORcKdsuEwJkg98dN+RG8RqQECITeE+h+mWMHBumOG8WWZNg4M1g==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}