@prefix this: <https://w3id.org/np/RAN0m-klVwEbsa2zX0tXinhC9R2VbEqY3oZ_9Z3mXvxgQ> .
@prefix sub: <https://w3id.org/np/RAN0m-klVwEbsa2zX0tXinhC9R2VbEqY3oZ_9Z3mXvxgQ/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>
    a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci dataset-resolvability assessor (Gemini 4 Argon)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "The three mechanical quantities—Young's modulus, yield strain, and fracture stress—are unambiguous and directly measurable. Published single-fibril AFM and MEMS tensile studies in the biomechanics literature allow testing whether mineral platelets increase stiffness and strength in the roughly 0.3 to 6 GPa regime. However, reproducing the exact simulation figures (6.23 vs 4.59 GPa, 6.7% vs 5%, 0.6 vs 0.3 GPa) is not possible from the public abstract alone because the mesoscale potential parameters and input files are not publicly deposited.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Measure the small-strain Young's modulus, tensile yield strain, and fracture stress of mineralized versus unmineralized single collagen fibrils in coarse-grained molecular dynamics and compare against compiled MEMS and AFM single-fibril tensile experiments. The directional claim is confirmed if mineralization consistently elevates all three quantities, while the exact numerical claim requires reproducing 6.23 versus 4.59 GPa, 6.7% versus 5% strain, and 0.6 versus 0.3 GPa.";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2007-nascent-bone-01: partially-resolvable, resolvability 0.55";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Published experimental single-fibril tensile measurements are scattered across studies and vary strongly with hydration, cross-linking density, and mineralization degree.",
      "The closed-access paper's coarse-grained bead potential parameters, hydroxyapatite platelet geometry, and mineral-protein interface interactions are not in the public abstract.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.75"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/buehler-2007-nascent-bone-01--gemini--dataset-1>,
      <https://w3id.org/delphi/resource/evidence/buehler-2007-nascent-bone-01--gemini--dataset-2>;
    <https://w3id.org/delphi/ontology/hasScore> "0.548"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "partially-resolvable" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Analysis feasibility of buehler-2007-nascent-bone-01 by Gemini 4 Argon: 0.5";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/analysis-feasibility";
    <https://w3id.org/delphi/ontology/hasScore> "0.5"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--data-adequacy>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2007-nascent-bone-01 by Gemini 4 Argon: 0.4";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-adequacy";
    <https://w3id.org/delphi/ontology/hasScore> "0.4"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data existence of buehler-2007-nascent-bone-01 by Gemini 4 Argon: 0.45";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-existence";
    <https://w3id.org/delphi/ontology/hasScore> "0.45"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2007-nascent-bone-01 by Gemini 4 Argon: 0.55";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.55"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2007-nascent-bone-01 by Gemini 4 Argon: 0.85";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
    <https://w3id.org/delphi/ontology/hasScore> "0.85"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2007-nascent-bone-01> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--analysis-feasibility>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--data-adequacy>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2007-nascent-bone-01--gemini--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "fibrillar collagen structural coordinates used to construct mineralized and unmineralized microfibril models";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
    prov:wasDerivedFrom <https://www.rcsb.org/> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2007-nascent-bone-01--gemini--dataset-2>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "open molecular dynamics code for running tensile tests on coarse-grained or atomistic collagen-hydroxyapatite fibril models";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: LAMMPS Molecular Dynamics Simulator";
    prov:wasDerivedFrom <https://www.lammps.org/> .
  
  <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gemini-4-argon-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-2.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2007-nascent-bone-01--gemini>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2007-nascent-bone-01: partially-resolvable, resolvability 0.55";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
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    npx:hasSignatureTarget this:;
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}